LOCUS BC013124 4226 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens DNA cross-link repair 1A (PSO2 homolog, S.
cerevisiae), mRNA (cDNA clone MGC:5167 IMAGE:3048375), complete
cds.
ACCESSION BC013124
VERSION BC013124.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4226)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4226)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC013124.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: l Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42734318.
FEATURES Location/Qualifiers
source 1..4226
/db_xref="H-InvDB:HIT000036135"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5167 IMAGE:3048375"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4226
/gene="DCLRE1A"
/gene_synonym="KIAA0086"
/gene_synonym="PSO2"
/gene_synonym="SNM1"
/db_xref="GeneID:9937"
/db_xref="HGNC:HGNC:17660"
/db_xref="MIM:609682"
CDS 667..3789
/gene="DCLRE1A"
/gene_synonym="KIAA0086"
/gene_synonym="PSO2"
/gene_synonym="SNM1"
/codon_start=1
/product="DNA cross-link repair 1A (PSO2 homolog, S.
cerevisiae)"
/protein_id="AAH13124.1"
/db_xref="GeneID:9937"
/db_xref="HGNC:HGNC:17660"
/db_xref="MIM:609682"
/translation="MLEDISEEDIWEYKSKRKPKRVDPNNGSKNILKSVEKATDGKYQ
SKRSRNRKRAAEAKEVKDHEVPLGNAGCQTSVASSQNSSCGDGIQQTQDKETTPGKLC
RTQKSQHVSPKIRPVYDGYCPNCQMPFSSLIGQTPRWHVFECLDSPPRSETECPDGLL
CTSTIPFHYKRYTHFLLAQSRAGDHPFSSPSPASGGSFSETKSGVLCSLEERWSSYQN
QTDNSVSNDPLLMTQYFKKSPSLTEASEKISTHIQTSQQALQFTDFVENDKLVGVALR
LANNSEHINLPLPENDFSDCEISYSPLQSDEDTHDIDEKPDDSQEQLFFTESSKDGSL
EEDDDSCGFFKKRHGPLLKDQDESCPKVNSFLTRDKYDEGLYRFNSLNDLSQPISQNN
ESTLPYDLACTGGDFVLFPPALAGKLAASVHQATKAKPDEPEFHSAQSNKQKQVIEES
SVYNQVSLPLVKSLMLKPFESQVEGYLSSQPTQNTIRKLSSENLNAKNNTNSACFCRK
ALEGVPVGKATILNTENLSSTPAPKYLKILPSGLKYNARHPSTKVMKQMDIGVYFGLP
PKRKEEKLLGESALEGINLNPVPSPNQKRSSQCKRKAEKSLSDLEFDASTLHESQLSV
ELSSERSQRQKKRCRKSNSLQEGACQKRSDHLINTESEAVNLSKVKVFTKSAHGGLQR
GNKKIPESSNVGGSRKKTCPFYKKIPGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAG
LSKHFTFPVYCSEITGNLLKNKLHVQEQYIHPLPLDTECIVNGVKVVLLDANHCPGAV
MILFYLPNGTVILHTGDFRADPSMERSLLADQKVHMLYLDTTYCSPEYTFPSQQEVIR
FAINTAFEAVTLNPHALVVCGTYSIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIP
EINSLITTDMCSSLVHLLPMMQINFKGLQSHLKKCGGKYNQILAFRPTGWTHSNKFTR
IADVIPQTKGNISIYGIPYSEHSSYLEMKRFVQWLKPQKIIPTVNVGTWKSRSTMEKY
FREWKLEAGY"
BASE COUNT 1346 a 780 c 862 g 1238 t
ORIGIN
1 gggattgttc attgctgctg gaggaagatc atggactgtc gcgggaaact gaagtggttg
61 agtatccact agtcgtggat gagggcagtg acttcgcagt tttttgcgaa ttacacatct
121 ctttgattat gttgtgacta gttttgttag atagtcattt agtgtttggg atacctgtta
181 agccctttgt ccagggactg tggttggatt tatgaattat ttggacggtt gtccacttga
241 aagaactgac agtagcttca taacaatgtt acaaatctcg ttctaagatt aagctgttga
301 acctatattt gccattagcg cttaattttt gaagtattat ttttatgaat caagccctgg
361 aaaaggacaa gatatttgaa tgaaatagca cccataatgg agaacttcac agttgctact
421 cctgtgatag gtttatctta gtttcattgt ggtataaatg gaatagcagg tgttgtcagg
481 tacaaggttt gtagcttgcc aatatgttca ttaccaacac tgcagattcc cattgagttg
541 gtgggggttt tgttaccttt gttttttttc tcagcaaaat aattctataa ctttttgttt
601 gtgacaagaa atggactttc agtttactta agattaatac ttcttgaatg ataaaatcat
661 tttgccatgt tagaagacat ttccgaagaa gacatttggg aatacaaatc taaaagaaaa
721 ccaaaacgag ttgatccaaa taatggctct aaaaatattc taaaatctgt tgaaaaagca
781 acagatggaa aataccagtc aaaacggagt agaaacagaa aaagagccgc agaagctaaa
841 gaggtgaagg accatgaagt gccccttgga aatgcaggtt gtcagacttc tgttgcttct
901 agtcagaatt caagttgtgg agatggtatt cagcagaccc aagacaagga aactactcca
961 ggaaaactct gtagaactca aaaaagccaa cacgtgtccc caaagatacg tccagtttat
1021 gatggatact gtccaaattg ccagatgcct ttttcctcat tgatagggca gacacctcga
1081 tggcatgttt ttgaatgttt ggattctcca ccacgctctg aaacagagtg tcctgatggt
1141 cttctgtgta cctcaaccat tccttttcat tacaagagat acactcactt cctgctagct
1201 caaagcaggg ctggtgatca tccttttagc agcccatcac ctgcgtcagg tggcagtttc
1261 agtgagacta agtcaggcgt cctttgtagc cttgaggaaa gatggtcttc gtatcagaac
1321 caaactgata actcggtttc aaatgatccc ttattgatga cacagtattt taaaaagtct
1381 ccgtctctga ctgaagccag tgaaaagatt tctactcata tccaaacatc ccaacaagct
1441 ctacaattta cagattttgt tgagaatgac aaactagtgg gagttgcttt gcgtcttgca
1501 aacaactcag aacacataaa tttgccattg ccagaaaatg acttcagtga ctgtgaaatc
1561 tcctattctc cacttcaaag tgatgaagac actcatgata tcgatgaaaa accggatgat
1621 tcacaagaac aactgttttt taccgaaagc tcaaaagatg gcagcctcga agaagatgat
1681 gacagctgtg gtttttttaa aaaacgacat ggtcccttac tgaaggacca ggatgagagc
1741 tgccccaaag tgaacagctt cttaactcgg gataagtatg atgaaggatt gtatagattc
1801 aatagtctaa atgatttgtc tcaacctatt tctcaaaata atgagagtac tttgccttat
1861 gatctggcat gtactggtgg tgattttgtg ttgtttccac ctgcattggc agggaagctt
1921 gctgcttctg ttcatcaggc aactaaagca aaacctgatg agccagaatt tcactcagct
1981 caatcaaata aacagaaaca ggtaattgaa gaatcatctg tttacaatca agtttctctt
2041 ccgttagtta agagtttaat gttgaaacct tttgaaagtc aggtagaagg gtatctttct
2101 tcccaaccaa cccaaaatac aattagaaaa ttatcaagtg agaacttgaa tgctaagaat
2161 aatactaact cagcatgttt ctgcagaaag gcattagagg gtgtgccagt tggtaaagct
2221 acaattttaa atacagaaaa cttgtctagt acacctgctc cgaagtattt gaaaatattg
2281 ccttctggtc ttaagtataa tgcaagacat ccttctacca aggtaatgaa gcaaatggat
2341 ataggtgtgt attttggact acctcccaaa agaaaggaag agaaattgct aggggaaagt
2401 gcattagaag ggataaactt aaatccagtt ccaagtccta atcaaaagag gtcctcgcag
2461 tgcaagagga aagcagaaaa atctttaagt gatttagaat ttgatgcaag tactttacat
2521 gagagtcagc tttctgtgga actttctagt gagaggtcac agcgtcaaaa aaagagatgt
2581 agaaagtcaa attcactgca ggaaggagcg tgtcagaaga gatcagatca ccttattaat
2641 acagaatctg aagcagtcaa tttaagtaaa gtcaaagtct tcacaaaatc agctcatggt
2701 gggctgcaaa ggggcaacaa gaaaatccca gagtcatcta atgtaggagg atcaagaaaa
2761 aagacatgtc cattctataa gaaaatacct ggaaccggct ttacagttga tgcctttcag
2821 tatggcgtgg ttgaaggttg cacagcctat tttctcacac attttcattc tgatcattat
2881 gctggattgt ctaaacactt cacatttcca gtttattgta gtgagataac tggcaatttg
2941 ttgaagaaca agcttcatgt gcaagaacaa tatattcacc cattgccact ggacactgaa
3001 tgtattgtga atggtgtcaa agttgttttg cttgatgcca atcactgtcc aggtgctgtc
3061 atgatcctct tttatcttcc taatggtact gtcatattac acacgggaga cttcagagca
3121 gatcccagca tggaacgttc tcttcttgcg gaccagaaag tccatatgct gtacttagat
3181 accacatatt gtagcccaga atacaccttt ccatctcagc aagaggttat ccggtttgcc
3241 atcaacactg cctttgaggc tgtaactcta aacccacatg ctcttgttgt ctgtggcact
3301 tactctattg gaaaagagaa agtcttccta gccattgctg atgttttagg ttcaaaagtg
3361 ggcatgtccc aggaaaaata taaaactcta cagtgcctca atataccaga aattaattca
3421 ctcatcacta ccgacatgtg cagttcattg gttcaccttc tcccaatgat gcaaattaat
3481 tttaagggct tacagagtca tttgaagaag tgtggtggga aatacaatca gattttggca
3541 tttcgaccta caggatggac acactctaac aagttcacta gaatagcaga tgttattccc
3601 cagaccaaag gaaacatttc aatatatgga attccttaca gtgaacacag cagctaccta
3661 gaaatgaagc gctttgtcca gtggctgaag ccccagaaaa tcatacctac tgtaaatgtg
3721 ggcacctgga aatctaggag cacaatggag aaatatttta gagagtggaa attggaagct
3781 ggatattgat gatacctccg aggattcagt agtagttaag ttccttggat gtagcttgtt
3841 agtagttaaa tctatagaaa tgtgaaatac actttgtgtg gaaaaacctc atgaagattg
3901 ttcagatact ttattttctc atttatgttt gaacaacatg ttcgtggtgc tgaatgcctc
3961 tcagcatcat caaggataac tgaaactggg tctccctggg acccttaatt tcttgtcccc
4021 tgccctccat gggcagttat attctgcatc aagccttaga agaggaagca aaggcagatt
4081 cagggaccaa aaggattaat gataattaat aaagtagttt gaagcattat atatataagt
4141 aattatgtgt ctttaaaatt atgagatgaa acttttatat gacgtgtata cttaaataaa
4201 attaatataa aaaaaaaaaa aaaaaa
//