LOCUS BC013118 1206 bp mRNA linear HUM 25-AUG-2005
DEFINITION Homo sapiens matrix metallopeptidase 1 (interstitial collagenase),
mRNA (cDNA clone IMAGE:3863095), partial cds.
ACCESSION BC013118
VERSION BC013118.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1206)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1206)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: h Column: 10.
FEATURES Location/Qualifiers
source 1..1206
/db_xref="H-InvDB:HIT000088012"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3863095"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_66"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1206
/gene="MMP1"
/gene_synonym="CLGN"
/db_xref="GeneID:4312"
/db_xref="MIM:120353"
CDS <1..701
/gene="MMP1"
/gene_synonym="CLGN"
/codon_start=3
/product="MMP1 protein"
/protein_id="AAH13118.1"
/db_xref="GeneID:4312"
/db_xref="MIM:120353"
/translation="PSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSK
LTFDAITTIRGEVMFFKDRFYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDE
VRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKY
WRYDEYKRSMDPGYPKMIAHDFPGIGHKVDAVFMKDGFFYFFHGTRQYKFDPKTKRIL
TLQKANSWFNCRKN"
BASE COUNT 380 a 240 c 241 g 345 t
ORIGIN
1 accctagcta caccttcagt ggtgatgttc agctagctca ggatgacatt gatggcatcc
61 aagccatata tggacgttcc caaaatcctg tccagcccat cggcccacaa accccaaaag
121 cgtgtgacag taagctaacc tttgatgcta taactacgat tcggggagaa gtgatgttct
181 ttaaagacag attctacatg cgcacaaatc ccttctaccc ggaagttgag ctcaatttca
241 tttctgtttt ctggccacaa ctgccaaatg ggcttgaagc tgcttacgaa tttgccgaca
301 gagatgaagt ccggtttttc aaagggaata agtactgggc tgttcaggga cagaatgtgc
361 tacacggata ccccaaggac atctacagct cctttggctt ccctagaact gtgaagcata
421 tcgatgctgc tctttctgag gaaaacactg gaaaaaccta cttctttgtt gctaacaaat
481 actggaggta tgatgaatat aaacgatcta tggatccagg ttatcccaaa atgatagcac
541 atgactttcc tggaattggc cacaaagttg atgcagtttt catgaaagat ggatttttct
601 atttctttca tggaacaaga caatacaaat ttgatcctaa aacgaagaga attttgactc
661 tccagaaagc taatagctgg ttcaactgca ggaaaaattg aacattacta atttgaatgg
721 aaaacacatg gtgtgagtcc aaagaaggtg ttttcctgaa gaattgtcta ttttctcagt
781 catttttaac ctctagagtc actgatacac agaatataat cttatttata cctcagtttg
841 catatttttt tactatttag aatgtagccc tttttgtact gatataattt agttccacaa
901 atggtgggta caaaaagtca agtttgtggc ttatggattc atataggcca gagttgcaaa
961 gatcttttcc agagtatgca actctgacgt tgatcccaga gagcagcttc agtgacaaac
1021 atatcctttc aagacagaaa gagacaggag acatgagtct ttgccggagg aaaagcagct
1081 caagaacaca tgtgcagtca ctggtgtcac cctggatagg caagggataa ctcttctaac
1141 acaaaataag tgttttatgt ttggaataaa gtcaaccttg tttctactgt taaaaaaaaa
1201 aaaaaa
//