LOCUS BC013045 3784 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily c, member 2, mRNA (cDNA clone
MGC:17103 IMAGE:4180388), complete cds.
ACCESSION BC013045
VERSION BC013045.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3784)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3784)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: k Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21237804.
FEATURES Location/Qualifiers
source 1..3784
/db_xref="H-InvDB:HIT000036100"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17103 IMAGE:4180388"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3784
/gene="SMARCC2"
/gene_synonym="BAF170"
/gene_synonym="CRACC2"
/gene_synonym="Rsc8"
/db_xref="GeneID:6601"
/db_xref="HGNC:HGNC:11105"
/db_xref="MIM:601734"
CDS 33..3425
/gene="SMARCC2"
/gene_synonym="BAF170"
/gene_synonym="CRACC2"
/gene_synonym="Rsc8"
/codon_start=1
/product="SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily c, member 2"
/protein_id="AAH13045.1"
/db_xref="GeneID:6601"
/db_xref="HGNC:HGNC:11105"
/db_xref="MIM:601734"
/translation="MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPP
TNKSLSSLVVQLLQFQEEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKS
DQGWRRYDFQNPSRMDRNVEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDII
KRHQGTVTEDKNNASHVVYPVPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPA
SEIEASVEDAPTPEKPRKVHAKWILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKT
LTDEVNSPDSDRRDKKGGNYKKRKRSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREE
EQEDLTKDMDEPSPVPNVEEVTLPKTVNTKKDSESAPVKGGTMTDLDEQEDESMETTG
KDEDENSTGNKGEQTKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFF
NGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWG
LINYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPLQPKTPQGRQVDADTKAGRKGKE
LDDLVPETAKGKPELQTSASQQMLNFPDKGKEKPTDMQNFGLRTDMYTKKNVPSKSKA
AASATREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLED
SEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKSALEEFSKMKEEVPT
ALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPERIEESGNDEARVEGQATD
EKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKESEKSDGDPIVDPEKEK
EPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAAAVKAKHFAAVEERK
IKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQAFHMEQLKY
AEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVAPASVVPAPAG
SGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPSPFPNQQTP
PSMMPGAVPGSGHPGVADPGTPLPPDPTAPSPGTVTPVPPPQ"
BASE COUNT 1061 a 1031 c 1029 g 663 t
ORIGIN
1 ggcgggcggc ggcggggccc gagccggaga agatggcggt gcggaagaag gacggcggcc
61 ccaacgtgaa gtactacgag gccgcggaca ccgtgaccca gttcgacaac gtgcggctgt
121 ggctcggcaa gaactacaag aagtatatac aagctgaacc acccaccaac aagtccctgt
181 ctagcctggt tgtacagttg ctacaatttc aggaagaagt ttttggcaaa catgtcagca
241 atgcaccgct cactaaactg ccgatcaaat gtttcctaga tttcaaagcg ggaggctcct
301 tgtgccacat tcttgcagct gcctacaaat tcaagagtga ccagggatgg cggcgttacg
361 atttccagaa tccatcacgc atggaccgca atgtggaaat gtttatgacc attgagaagt
421 ccttggtgca gaataattgc ctgtctcgac ctaacatttt tctgtgccca gaaattgagc
481 ccaaactact agggaaatta aaggacatta tcaagagaca ccagggaaca gtcactgagg
541 ataagaacaa tgcctcccat gttgtgtatc ctgtcccggg gaatctagaa gaagaggaat
601 gggtacgacc agtcatgaag agggataagc aggttcttct gcactggggc tactatcctg
661 acagttacga cacgtggatc ccagcgagtg aaattgaggc atctgtggaa gatgctccaa
721 ctcctgagaa acctaggaag gttcatgcaa agtggatcct ggacaccgac accttcaatg
781 aatggatgaa tgaggaagac tatgaagtaa atgatgacaa aaaccctgtc tcccgccgaa
841 agaagatttc agccaagaca ctgacagatg aggtgaacag cccagattca gatcgacggg
901 acaagaaggg gggaaactat aagaagagga agcgctcccc ctctccttca ccaaccccag
961 aagcaaagaa gaaaaatgct aagaaaggtc cctcaacacc ttacactaag tcaaagcgtg
1021 gccacagaga agaggagcaa gaagacctga caaaggacat ggacgagccc tcaccagtcc
1081 ccaatgtaga agaggtgaca cttcccaaaa cagtcaacac aaagaaagac tcagagtcgg
1141 ccccagtcaa aggcggcacc atgaccgacc tggatgaaca ggaagatgaa agcatggaga
1201 cgacgggcaa ggatgaggat gagaacagta cggggaacaa gggagagcag accaagaatc
1261 cagacctgca tgaggacaat gtgactgaac agacccacca catcatcatt cccagctacg
1321 ctgcctggtt tgactacaat agtgttcatg ccattgagcg gagggctctc cccgagttct
1381 tcaacggcaa gaacaagtcc aagactccag agatctacct ggcctatcga aactttatga
1441 ttgacactta ccgactgaac ccccaagagt atcttacctc taccgcctgc cgccgaaacc
1501 tagcgggtga tgtctgtgcc atcatgaggg tccatgcctt cctagaacag tggggtctta
1561 ttaactacca ggtggatgct gagagtcgac caaccccaat ggggcctccg cctacctctc
1621 acttccatgt cttggctgac acaccatcag ggctggtgcc tctgcagccc aagacacctc
1681 agggccgcca ggttgatgct gataccaagg ctgggcgaaa gggcaaagag ctggatgacc
1741 tggtgccaga gacggctaag ggcaagccag agctgcagac ctctgcttcc caacaaatgc
1801 tcaactttcc tgacaaaggc aaagagaaac caacagacat gcaaaacttt gggctgcgca
1861 cagacatgta cacaaaaaag aatgttccct ccaagagcaa ggctgcagcc agtgccactc
1921 gtgagtggac agaacaggaa accctgcttc tcctggaggc actggaaatg tacaaagatg
1981 actggaacaa agtgtccgag catgtgggaa gccgcacaca ggacgagtgc atcttgcatt
2041 ttcttcgtct tcccattgaa gacccatacc tggaggactc agaggcctcc ctaggccccc
2101 tggcctacca acccatcccc ttcagtcagt cgggcaaccc tgttatgagc actgttgcct
2161 tcctggcctc tgtcgtcgat ccccgagtcg cctctgctgc tgcaaagtca gccctagagg
2221 agttctccaa aatgaaggaa gaggtaccca cggccttggt ggaggcccat gttcgaaaag
2281 tggaagaagc agccaaagta acaggcaagg cggaccctgc cttcggtctg gaaagcagtg
2341 gcattgcagg aaccacctct gatgagcctg agcggattga ggagagcggg aatgacgagg
2401 ctcgggtgga aggccaggcc acagatgaga agaaggagcc caaggaaccc cgagaaggag
2461 ggggtgctat agaggaggaa gcaaaagaga aaaccagcga ggctcccaag aaggatgagg
2521 agaaagggaa agaaggcgac agtgagaagg agtccgagaa gagtgatgga gacccaatag
2581 tcgatcctga gaaggagaag gagccaaagg aagggcagga ggaagtgctg aaggaagtgg
2641 tggagtctga gggggaaagg aagacaaagg tggagcggga cattggcgag ggcaacctct
2701 ccaccgctgc tgccgccgcc ctggccgccg ccgcagtgaa agctaagcac tttgctgctg
2761 ttgaggaaag gaagatcaaa tctttggtgg ccctgctggt ggagacccag atgaaaaagt
2821 tggagatcaa acttcggcac tttgaggagc tggagactat catggaccgg gagcgagaag
2881 cactggagta tcagaggcag cagctcctgg ccgacagaca agccttccac atggagcagc
2941 tgaagtatgc ggagatgagg gctcggcagc agcacttcca acagatgcac caacagcagc
3001 agcagccacc accagccctg cccccaggct cccagcctat ccccccaaca ggggctgctg
3061 ggccacccgc agtccatggc ttggctgtgg ctccagcctc tgtagtccct gctcctgctg
3121 gcagtggggc ccctccagga agtttgggcc cttctgaaca gattgggcag gcagggtcaa
3181 ctgcagggcc acagcagcag caaccagctg gagcccccca gcctggggca gtcccaccag
3241 gggttccccc ccctggaccc catggcccct caccgttccc caaccaacaa actcctccct
3301 caatgatgcc aggggcagtg ccaggcagcg ggcacccagg cgtggcggac ccaggcaccc
3361 ccctgcctcc agaccccaca gccccgagcc caggcacggt cacccctgtg ccacctccac
3421 agtgaggagc cagccagaca tctctccccc tcaccccctg tggacatcac ggttccagga
3481 acagcccttc ccccaccact gggaccctcc ccagcctgga gagttcatca ctacgtaagg
3541 aaagctcctt ccgcccctcc aaagccctca ccatgcctaa cagaggcatg catttttata
3601 tcagattatt caaggacttc tgtttaaaag atgtttataa tgtctgggag agaggatagg
3661 atgggaatgc tgccctaaag gaagggctgg tgaaaggtgt ttatacaagg ttctattaac
3721 cacttctaag ggtacacctc cctccaaact actgcatttt ctatggatta aaaaaaaaaa
3781 aaaa
//