LOCUS BC012996 967 bp mRNA linear HUM 16-FEB-2007 DEFINITION Homo sapiens PDZ domain containing 11, mRNA (cDNA clone MGC:3404 IMAGE:3530647), complete cds. ACCESSION BC012996 VERSION BC012996.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 967) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 967) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (20-AUG-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Oct 31, 2003 this sequence version replaced BC012996.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 11 Row: a Column: 23 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40254875. FEATURES Location/Qualifiers source 1..967 /db_xref="H-InvDB:HIT000036067" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:3404 IMAGE:3530647" /tissue_type="Muscle, rhabdomyosarcoma" /clone_lib="NIH_MGC_17" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..967 /gene="PDZD11" /gene_synonym="AIPP1" /gene_synonym="PISP" /db_xref="GeneID:51248" /db_xref="HGNC:HGNC:28034" /db_xref="MIM:300632" CDS 42..464 /gene="PDZD11" /gene_synonym="AIPP1" /gene_synonym="PISP" /codon_start=1 /product="PDZ domain containing 11" /protein_id="AAH12996.1" /db_xref="GeneID:51248" /db_xref="HGNC:HGNC:28034" /db_xref="MIM:300632" /translation="MDSRIPYDDYPVVFLPAYENPPAWIPPHERVHHPDYNNELTQFL PRTITLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDF QDIEHSKAVEILKTAREISMRVRFFPYNYHRQKERTVH" BASE COUNT 269 a 242 c 210 g 246 t ORIGIN 1 gtctgaggtc gctgtggact gcccactggg ccttgcccga gatggacagc cggattcctt 61 atgatgacta cccggtggtt ttcttgcctg cctatgagaa tcctccagca tggattcctc 121 ctcatgagag ggtacaccac ccggactaca acaatgagtt gacccagttt ctgccccgaa 181 ccatcacact gaagaagcct cctggagctc agttgggatt taacatccga ggaggaaagg 241 cctcccagct aggcatcttc atctccaagg tgattcctga ctctgatgca catagagcag 301 gactgcagga aggggaccaa gttctagctg tgaatgatgt ggatttccaa gatattgagc 361 acagcaaggc tgttgagatc ctgaagacag ctcgtgaaat cagcatgcgt gtgcgcttct 421 ttccctacaa ttatcatcgc caaaaagaga ggactgtgca ctagaaagtt gcagcccaca 481 gcccttcatg tggactctgt catgacatgc taactagact tcaggggagc cacttctgtt 541 ttcagcccct ccctggaata gtgagttggg aggatgggga gacagctaac caactgcatt 601 acccaaacca tattgcactt ttagttccct agttttctag gtgagcttca ttccctgaaa 661 ggaggatgat gatatctagg cataacctag cctgtgagga acctagttag gaaagacaac 721 tgacatttat tgaatatcat gcactagtcc cttacatatg tcatatttta attatagaaa 781 tcagtagcaa aaagaatctt ggggattttc catctgactt ccctggccat cttatcccat 841 ccttgcacta ccagaagatt catacacttt tgagactcca gtgagacgct gttttcaccc 901 cttcctcctc ctagcctctc tcccaaaaag taaaacacaa tgctgaagaa aaaaaaaaaa 961 aaaaaaa //