LOCUS BC012939 1736 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens cardiotrophin-like cytokine factor 1, mRNA (cDNA clone
MGC:21195 IMAGE:4453813), complete cds.
ACCESSION BC012939
VERSION BC012939.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1736)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1736)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 28 Row: b Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50726992.
FEATURES Location/Qualifiers
source 1..1736
/db_xref="H-InvDB:HIT000036046"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21195 IMAGE:4453813"
/tissue_type="Kidney, hypernephroma"
/clone_lib="NIH_MGC_89"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1736
/gene="CLCF1"
/gene_synonym="BSF3"
/gene_synonym="CISS2"
/gene_synonym="CLC"
/gene_synonym="NNT1"
/gene_synonym="NR6"
/db_xref="GeneID:23529"
/db_xref="HGNC:HGNC:17412"
/db_xref="MIM:607672"
CDS 73..750
/gene="CLCF1"
/gene_synonym="BSF3"
/gene_synonym="CISS2"
/gene_synonym="CLC"
/gene_synonym="NNT1"
/gene_synonym="NR6"
/codon_start=1
/product="cardiotrophin-like cytokine factor 1"
/protein_id="AAH12939.1"
/db_xref="GeneID:23529"
/db_xref="HGNC:HGNC:17412"
/db_xref="MIM:607672"
/translation="MDLRAGDSWGMLACLCTVLWHLPAVPALNRTGDPGPGPSIQKTY
DLTRYLEHQLRSLAGTYLNYLGPPFNEPDFNPPRLGAETLPRATVDLEVWRSLNDKLR
LTQNYEAYSHLLCYLRGLNRQAATAELRRSLAHFCTSLQGLLGSIAGVMAALGYPLPQ
PLPGTEPTWTPGPAHSDFLQKMDDFWLLKELQTWLWRSAKDFNRLKKKMQPPAAAVTL
HLGAHGF"
BASE COUNT 371 a 546 c 454 g 365 t
ORIGIN
1 gccgcggctc gccctcccac tccgccagcc tccgggagag gagccgcacc cggccggccc
61 ggccccagcc ccatggacct ccgagcaggg gactcgtggg ggatgttagc gtgcctgtgc
121 acggtgctct ggcacctccc tgcagtgcca gctctcaatc gcacagggga cccagggcct
181 ggcccctcca tccagaaaac ctatgacctc acccgctacc tggagcacca actccgcagc
241 ttggctggga cctatctgaa ctacctgggc ccccctttca acgagccaga cttcaaccct
301 ccccgcctgg gggcagagac tctgcccagg gccactgttg acttggaggt gtggcgaagc
361 ctcaatgaca aactgcggct gacccagaac tacgaggcct acagccacct tctgtgttac
421 ttgcgtggcc tcaaccgtca ggctgccact gctgagctgc gccgcagcct ggcccacttc
481 tgcaccagcc tccagggcct gctgggcagc attgcgggcg tcatggcagc tctgggctac
541 ccactgcccc agccgctgcc tgggactgaa cccacttgga ctcctggccc tgcccacagt
601 gacttcctcc agaagatgga cgacttctgg ctgctgaagg agctgcagac ctggctgtgg
661 cgctcggcca aggacttcaa ccggctcaag aagaagatgc agcctccagc agctgcagtc
721 accctgcacc tgggggctca tggcttctga cttctgacct tctcctcttc gctccccctt
781 caaaccctgc tcccactttg tgagagccag ccctgtatgc caacacctgt tgagccagga
841 gacagaagct gtgagcctct ggccctttcc tggaccggct gggcgtgtga tgcgatcagc
901 cctgtctcct ccccacctcc caaaggtcta ccgagctggg gaggaggtac agtaggccct
961 gtcctgtcct gtttctacag gaagtcatgc tcgagggagt gtgaagtggt tcaggttggt
1021 gcagaggcgc tcatggcctc ctgcttcttg cctaccactt ggccagtgcc cacccagccc
1081 ctcaggtggc acatctggag ggcaggggtt gaggggccac caccacacat gcctttctgg
1141 ggtgaagccc tttggctgcc ccactctcct tggatgggtg ttgctccctt atccccaaat
1201 cactctatac atccaattca ggaaacaaac atggtggcaa ttctacacaa aaagagatga
1261 gattaacagt gcagggttgg ggtctgcatt ggaggtgccc tataaaccag aagagaaaat
1321 actgaaagca caggggcagg gacagaccag accagaccca ggagtctcca aagcacagag
1381 tggcaaacaa aacccgagct gagcatcagg accttgcctc gaattgtctt ccagtattac
1441 ggtgcctctt ctctgccccc tttcccaggg tatctgtggg ttgccaggct ggggagggca
1501 accatagcca caccacagga tttcctgaaa gtttacaatg cagtagcatt ttggggtgta
1561 gggtggcagc tccccaaggc cctgcccccc agccccaccc actcatgact ctaagtgtgt
1621 tgtattaata tttatttatt tggagatgtt atttattaga tgatatttat tgcagaattt
1681 ctattcttgt attaacaaat aaaatgcttg ccccagaaaa aaaaaaaaaa aaaaaa
//