LOCUS BC012910 1703 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens snail homolog 1 (Drosophila), mRNA (cDNA clone
MGC:21748 IMAGE:4537122), complete cds.
ACCESSION BC012910
VERSION BC012910.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1703)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1703)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 28 Row: k Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18765740.
FEATURES Location/Qualifiers
source 1..1703
/db_xref="H-InvDB:HIT000036029"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21748 IMAGE:4537122"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1703
/gene="SNAI1"
/gene_synonym="dJ710H13.1"
/gene_synonym="SLUGH2"
/gene_synonym="SNA"
/gene_synonym="SNAH"
/db_xref="GeneID:6615"
/db_xref="HGNC:HGNC:11128"
/db_xref="MIM:604238"
CDS 66..860
/gene="SNAI1"
/gene_synonym="dJ710H13.1"
/gene_synonym="SLUGH2"
/gene_synonym="SNA"
/gene_synonym="SNAH"
/codon_start=1
/product="snail homolog 1 (Drosophila)"
/protein_id="AAH12910.1"
/db_xref="GeneID:6615"
/db_xref="HGNC:HGNC:11128"
/db_xref="MIM:604238"
/translation="MPRSFLVRKPSDPNRKPNYSELQDSNPEFTFQQPYDQAHLLAAI
PPPEILNPTASLPMLIWDSVLAPQAQPIAWASLRLQESPRVAELTSLSDEDSGKGSQP
PSPPSPAPSSFSSTSVSSLEAEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCN
KEYLSLGALKMHIRSHTLPCVCGTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFA
DRSNLRAHLQTHSDVKKYQCQACARTFSRMSLLHKHQESGCSGCPR"
BASE COUNT 351 a 567 c 418 g 367 t
ORIGIN
1 ggcctagcga gtggttcttc tgcgctactg ctgcgcgaat cggcgacccc agtgcctcga
61 ccactatgcc gcgctctttc ctcgtcagga agccctccga ccccaatcgg aagcctaact
121 acagcgagct gcaggactct aatccagagt ttaccttcca gcagccctac gaccaggccc
181 acctgctggc agccatccca cctccggaga tcctcaaccc caccgcctcg ctgccaatgc
241 tcatctggga ctctgtcctg gcgccccaag cccagccaat tgcctgggcc tcccttcggc
301 tccaggagag tcccagggtg gcagagctga cctccctgtc agatgaggac agtgggaaag
361 gctcccagcc ccccagccca ccctcaccgg ctccttcgtc cttctcctct acttcagtct
421 cttccttgga ggccgaggcc tatgctgcct tcccaggctt gggccaagtg cccaagcagc
481 tggcccagct ctctgaggcc aaggatctcc aggctcgaaa ggccttcaac tgcaaatact
541 gcaacaagga atacctcagc ctgggtgccc tcaagatgca catccgaagc cacacgctgc
601 cctgcgtctg cggaacctgc gggaaggcct tctctaggcc ctggctgcta caaggccatg
661 tccggaccca cactggcgag aagcccttct cctgtcccca ctgcagccgt gccttcgctg
721 accgctccaa cctgcgggcc cacctccaga cccactcaga tgtcaagaag taccagtgcc
781 aggcgtgtgc tcggaccttc tcccgaatgt ccctgctcca caagcaccaa gagtccggct
841 gctcaggatg tccccgctga ccctcgaggc tccctcttcc tctccatacc tgcccctgcc
901 tgacagcctt ccccagctcc agcaggaagg accccacatc cttctcactg ccatggaatt
961 ccctcctgag tgccccactt ctggccacat cagccccaca ggactttgat gaagaccatt
1021 ttctggttct gtgtcctctg cctgggctct ggaagaggcc ttcccatggc catttctgtg
1081 gagggagggc agctggcccc cagccctggg ggattcctga gctggcctgt ctgcgtgggt
1141 ttttgtatcc agagctgttt ggatacagct gctttgagct acaggacaaa ggctgacaga
1201 ctcactggga agctcccacc ccactcaggg gaccccactc ccctcacaca caccccccca
1261 caaggaaccc tcaggccacc ctccacgagg tgtgactaac tatgcaataa tccaccccca
1321 ggtgcagccc cagggcctgc ggaggcggtg gcagactaga gtctgagatg ccccgagccc
1381 aggcagctat ttcagcctcc tgtttggtgg ggtggcacct gtttcccggg caatttaaca
1441 atgtctgaaa agggactgtg agtaatggct gtcacttgtc gggggcccaa gtggggtgct
1501 ctggtctgac cgatgtgtct cccagaacta ttctgggggc ccgacaggtg ggcctgggag
1561 gaagatgttt acatttttaa aggtacactg gtatttatat ttcaaacatt ttgtatcaag
1621 gaaacgtttt gtatagttat atgtacagtt tattgatatt caataaagca gttaatttat
1681 atattaaaaa aaaaaaaaaa aaa
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