LOCUS BC012841 1834 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens X-box binding protein 1, mRNA (cDNA clone MGC:8980
IMAGE:3856898), complete cds.
ACCESSION BC012841
VERSION BC012841.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1834)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1834)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: a Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14110394.
FEATURES Location/Qualifiers
source 1..1834
/db_xref="H-InvDB:HIT000035989"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8980 IMAGE:3856898"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_66"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1834
/gene="XBP1"
/gene_synonym="TREB5"
/db_xref="GeneID:7494"
/db_xref="HGNC:HGNC:12801"
/db_xref="MIM:194355"
CDS 33..818
/gene="XBP1"
/gene_synonym="TREB5"
/codon_start=1
/product="X-box binding protein 1"
/protein_id="AAH12841.1"
/db_xref="GeneID:7494"
/db_xref="HGNC:HGNC:12801"
/db_xref="MIM:194355"
/translation="MVVVAAAPNPADGTPKVLLLSGQPASAAGAPAGQALPLMVPAQR
GASPEAASGGLPQARKRQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQV
VDLEEENQKLLLENQLLREKTHGLVVENQELRQRLGMDALVAEEEAEAKGNEVRPVAG
SAESAALRLRAPLQQVQAQLSPLQNISPWILAVLTLQIQSLISCWAFWTTWTQSCSSN
ALPQSLPAWRSSQRSTQKDPVPYQPPFLCQWGRHQPSWKPLMN"
BASE COUNT 486 a 443 c 448 g 457 t
ORIGIN
1 ggcgcgcggt gcgcggtgcg tagtctggag ctatggtggt ggtggcagcc gcgccgaacc
61 cggccgacgg gacccctaaa gttctgcttc tgtcggggca gcccgcctcc gccgccggag
121 ccccggccgg ccaggccctg ccgctcatgg tgccagccca gagaggggcc agcccggagg
181 cagcgagcgg ggggctgccc caggcgcgca agcgacagcg cctcacgcac ctgagccccg
241 aggagaaggc gctgaggagg aaactgaaaa acagagtagc agctcagact gccagagatc
301 gaaagaaggc tcgaatgagt gagctggaac agcaagtggt agatttagaa gaagagaacc
361 aaaaactttt gctagaaaat cagcttttac gagagaaaac tcatggcctt gtagttgaga
421 accaggagtt aagacagcgc ttggggatgg atgccctggt tgctgaagag gaggcggaag
481 ccaaggggaa tgaagtgagg ccagtggccg ggtctgctga gtccgcagca ctcagactac
541 gtgcacctct gcagcaggtg caggcccagt tgtcacccct ccagaacatc tccccatgga
601 ttctggcggt attgactctt cagattcaga gtctgatatc ctgttgggca ttctggacaa
661 cttggaccca gtcatgttct tcaaatgccc ttccccagag cctgccagcc tggaggagct
721 cccagaggtc tacccagaag gacccagttc cttaccagcc tccctttctc tgtcagtggg
781 gacgtcatca gccaagctgg aagccattaa tgaactaatt cgttttgacc acatatatac
841 caagccccta gtcttagaga taccctctga gacagagagc caagctaatg tggtagtgaa
901 aatcgaggaa gcacctctca gcccctcaga gaatgatcac cctgaattca ttgtctcagt
961 gaaggaagaa cctgtagaag atgacctcgt tccggagctg ggtatctcaa atctgctttc
1021 atccagccac tgcccaaagc catcttcctg cctactggat gcttacagtg actgtggata
1081 cgggggttcc ctttccccat tcagtgacat gtcctctctg cttggtgtaa accattcttg
1141 ggaggacact tttgccaatg aactctttcc ccagctgatt agtgtctaag gaatgatcca
1201 atactgttgc ccttttcctt gactattaca ctgcctggag gatagcagag aagcctgtct
1261 gtacttcatt caaaaagcca aaatagagag tatacagtcc tagagaattc ctctatttgt
1321 tcagatctca tagatgaccc ccaggtattg tcttttgaca tccagcagtc caaggtattg
1381 agacatatta ctggaagtaa gaaatattac tataattgag aactacagct tttaagattg
1441 tacttttatc ttaaaagggt ggtagttttc cctaaaatac ttattatgta agggtcatta
1501 gacaaatgtc ttgaagtaga catggaattt atgaatggtt ctttatcatt tctcttcccc
1561 ctttttggca tcctggcttg cctccagttt taggtccttt agtttgcttc tgtaagcaac
1621 gggaacacct gctgaggggg ctctttccct catgtatact tcaagtaaga tcaagaatct
1681 tttgtgaaat tatagaaatt tactatgtaa atgcttgatg gaattttttc ctgctagtgt
1741 agcttctgaa aggtgctttc tccatttatt taaaactacc catgcaatta aaaggtacaa
1801 tgcagaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
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