LOCUS BC012796 2820 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens CDC42 small effector 1, mRNA (cDNA clone MGC:16904
IMAGE:3924598), complete cds.
ACCESSION BC012796
VERSION BC012796.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2820)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2820)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Jan 3, 2002 this sequence version replaced BC012796.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: f Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 12965169.
FEATURES Location/Qualifiers
source 1..2820
/db_xref="H-InvDB:HIT000035953"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16904 IMAGE:3924598"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2820
/gene="CDC42SE1"
/gene_synonym="SCIP1"
/gene_synonym="SPEC1"
/db_xref="GeneID:56882"
/db_xref="HGNC:HGNC:17719"
CDS 179..418
/gene="CDC42SE1"
/gene_synonym="SCIP1"
/gene_synonym="SPEC1"
/codon_start=1
/product="CDC42 small effector 1"
/protein_id="AAH12796.2"
/db_xref="GeneID:56882"
/db_xref="HGNC:HGNC:17719"
/translation="MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGS
GEMGAGDGLAMTGAVQEQMRSKGNRDRPWSNSRGL"
BASE COUNT 733 a 638 c 647 g 802 t
ORIGIN
1 ctgaccttca ctgctcagtt aaaggttcca gggattccac tttgtctgga cccatccagc
61 tgagtgaacc cagggtggtg gtgtatctgg ggagagtgag gagtgggttg tccaaacacc
121 agggaaagag ccctttgggg cctcagacag aggagtgaag ctggaaccat cagggaacat
181 gagtgaattt tggcacaaac tgggctgctg tgtggtagag aaaccccagc cgaagaagaa
241 gagaagacgg attgaccgga ccatgattgg ggaaccaatg aattttgttc acctgactca
301 cattggctca ggggagatgg gggccggaga tggacttgcc atgacaggtg cagttcagga
361 gcagatgaga tccaagggaa accgagatag gccatggagc aattctaggg gcttatagct
421 ccaataatgg aatggttctg ccatcttgaa acccccattc tgtttccagc ccagaagaaa
481 tgctgcccct accagatccc tccttgaacc agtgatctaa ggacccctct tttccctatc
541 tgcctaacag tgcctcacaa ggcttggggg ctggactccc tctactccct ctggccatag
601 cccctcctgg agatggggtc aaggcagcag gactgatcaa gtgactactg gttagccaga
661 ggagctcagc tgaagccctg gaaaccctca ggtctgagat aggagttctc taggaacctg
721 gaatgagttc ctgtctcctg aatgatggtc tgggtgccac ctgtttttaa actcttaaac
781 ctggaactcc ttaaatgggg taggtgggtg agattatcaa agctgaagct ggctttgctg
841 agaagctccc tacctccctg cccttctcct ccttcctgct ggaatgaact aaagcagatg
901 tcaagcaggg gctggtgggg gtgcctactc ccttttccac tctatcttta gatttcaaac
961 cttaggctta cagcccctca atatctctct gctaacacca gtgtctcttt ctagttaggc
1021 ctctaatctt ctgtttctgt ttaccagctt cccagcaact ttcctttttt aaaatattaa
1081 aaatttaatt caggttctct taattatcct catcctgctg ttgcctccgc ccttaactct
1141 atccctatta ggaaccttgt ttcccaccga ataagagtta aggtaagagg tagctcttca
1201 cctgatgaca ttccatttaa gttttggggc atctttcctg ccctctgcca acctccctgc
1261 tggcccaggt gagaggagga agaggggtct ggaaagaaac ccagaatgcg gcagaactag
1321 gagtaagtcc atctcaaggt ggacttctga tcattgagga tggtgagata aataggttga
1381 aaacaatcat ctgtgagttt aggagtctta agatcctcac agcacgggag cagggagagg
1441 ctctagaaca aggtttcaca accgagatgc ctttgacatt ttgggctgaa gtgttctttg
1501 taaggaaaac ctgtttccta ttttgtgcat tacaggatat ttagcagcac ccctggccca
1561 ctctagttat gacaaccaaa aatgtctcta tacattgcca gatttctcct agggggcaaa
1621 atcgcctcca tttgagaacc acaactctaa agtcaagata tttttctctg aagtgatttc
1681 tgcttggcac gctaccctca tcatcttact catcttaagc ccgagccatg gatcaactag
1741 gagcccatat aaatgaggct cagtagggct gcacataatc tccaaacaat tctttattca
1801 gtgttttgct tgtgtttgca tgttgctatg atggacaggt ccccctcctc cattcttgcc
1861 ctctggagaa gtggttcctg cagtgtagag atatgaacag ggtatggtag gattggggaa
1921 aggggagaga gaagcagtag atacactcct tatcctcccc aaattttaag ctctatttct
1981 gtgccctagt cctagacaca cattagactc agggagtttt gtctgaagac caggtcccac
2041 tgccccctgg ctgaagagtc tgctttaaat gggaaaacaa cgtaggagca ggggttttta
2101 ggcactttca gtattctcag gtgttcttcg ttctggccct tccagggtaa ttaggaaggc
2161 agaacaagac agatgagctc ctgcctgctc tgagacaaga agggtggggt ctcattagct
2221 ttgcaacagg aaacatcctg ttttatggta gtggggtcag gaatgtagga actggtatcc
2281 attctgccaa ttccaccacc cattcagttt gcttatccct acagaacagt gactgaggtt
2341 cttttttttt tttttttttt ttttttttca aatttccatg tattttctgc catttttcag
2401 ggtctaagat tggtcataca ttcccaattt actctcagtt ccagtcaagc tggttgctct
2461 gaaagtaacc cagcttgttg ctctaaaata cctcagtagc ctgagtgtta tactagagat
2521 ctaaagggtt aacaggatag ggtggaaagg ttagagactc ctagaaatct ctggtcaccg
2581 tgatcttcgg cctcattcta atacctgttc tttggacagt ctttttcctt tggtgctctc
2641 ttgcctttag ctaccttctc taatatgtat gctaccatca ctaataaagt gatgggaatg
2701 ggtttgagag tcgtaattta tattaaaaag ttgttggact tttaaataca ttttttcaaa
2761 taaaaaatta agcaaaatag ttgcacagta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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