LOCUS BC012726 2824 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 31, mRNA (cDNA
clone IMAGE:3941452), partial cds.
ACCESSION BC012726
VERSION BC012726.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2824)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2824)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC012726.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 25 Row: f Column: 12.
FEATURES Location/Qualifiers
source 1..2824
/db_xref="H-InvDB:HIT000035915"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3941452"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2824
/gene="DDX31"
/gene_synonym="FLJ13633"
/gene_synonym="FLJ14578"
/gene_synonym="FLJ23349"
/db_xref="GeneID:64794"
CDS <1..2334
/gene="DDX31"
/gene_synonym="FLJ13633"
/gene_synonym="FLJ14578"
/gene_synonym="FLJ23349"
/codon_start=1
/product="DDX31 protein"
/protein_id="AAH12726.2"
/db_xref="GeneID:64794"
/translation="GAGSSRVPRGVPGPAVCAPGSLLHHASPTQTMAAADGSLFDNPR
TFSRRPPAQASRQAKATKRKYQASSEAPPAKRRNETSFLPAKKTSVKETQRTFKGNAQ
KMFSPKKHSVSTSDRNQEERQCIKTSSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHE
LGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQS
LQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEK
ARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNA
VNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPP
PAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVE
FHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVL
LCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYV
NSLASHKINVSEIKMEDILCVLTRDDCFKGKRWGAQKSHAVGPQEIRERATVLQTVFE
DYVHSSERRVSWAKKALQSFIQAYATYPRELKHIFHVRSLHLGHVAKSFGLRDAPRNL
SALTRKKRKAHVKRPDLHKKTQSKHSLAEILRSEYSSGMEADVAKVKKQNAPGEPGGR
PLQHSLQPTPCFGRGKTLKWRKTQKGVQRDSKTSQKV"
misc_feature 472..1110
/gene="DDX31"
/gene_synonym="FLJ13633"
/gene_synonym="FLJ14578"
/gene_synonym="FLJ23349"
/note="DEADc; Region: DEAD-box helicases. A diverse family
of proteins involved in ATP-dependent RNA unwinding,
needed in a variety of cellular processes including
splicing, ribosome biogenesis and RNA degradation. The
name derives from the sequence of the Walker B motif
(motif II). This domain contains the ATP- binding region"
/db_xref="CDD:cd00268"
misc_feature 1219..1671
/gene="DDX31"
/gene_synonym="FLJ13633"
/gene_synonym="FLJ14578"
/gene_synonym="FLJ23349"
/note="HELICc; Region: Helicase superfamily c-terminal
domain"
/db_xref="CDD:cd00079"
BASE COUNT 768 a 713 c 724 g 619 t
ORIGIN
1 ggcgcagggt cctcgcgcgt cccacgtggg gtcccgggcc cagcagtctg cgcaccgggc
61 tcgctgctgc accacgcgtc acccacgcag accatggcag ccgccgacgg ttcgctcttc
121 gacaacccca ggacgttctc cagacgtccc ccagcccagg cgagtcggca agcaaaggct
181 acgaaaagaa aataccaagc gtccagtgag gctcccccag cgaaacggag gaacgaaact
241 tcatttctcc cagccaagaa aactagtgtt aaagaaactc agaggacttt taaggggaac
301 gcacaaaaaa tgttttctcc aaagaagcat tcggttagca caagtgatag aaaccaggag
361 gagagacagt gcattaagac ttcatcactg tttaaaaaca accctgacat tccagaactc
421 cacagacctg tggtaaagca ggtgcaagaa aaagtgttta cttcagctgc ttttcatgag
481 ctgggcctcc acccacattt aatttccaca ataaatacgg tcttaaaaat gtctagtatg
541 accagtgttc agaagcaaag tattcctgtg ttgctggaag gcagagatgc tctcgtgaga
601 tcccagacgg gctcaggtaa aactcttgcc tattgcatcc ctgtggtcca gtcccttcaa
661 gcaatggagt caaaaataca gcgcagtgat ggcccctatg ccctggtgct cgtgccaacg
721 agagagctag ctctacaaag ctttgacact gtccagaaac tgcttaagcc tttcacctgg
781 attgtgcctg gagtgttaat gggaggagag aagagaaaat cagaaaaggc cagactccgc
841 aaaggaataa atatccttat ctcaactcct ggacgcctgg tggatcatat aaaatccaca
901 aagaacattc attttagtcg gctgcggtgg ttggtgtttg atgaagcaga cagaatcttg
961 gatttgggtt ttgaaaagga catcacagtg atacttaatg ctgtaaatgc tgaatgccaa
1021 aaacgacaga atgtcttgct atcagcgaca ctcacagaag gtgtaacgcg gctagctgat
1081 atcagtttgc atgatccagt cagtatttct gtcctggaca agagccatga ccagttgaac
1141 ccaaaggaca aagcggtcca ggaggtctgt cctccaccag ctggcgacaa gctggacagc
1201 tttgcaatac cagagagtct caagcagcat gtgactgtgg ttcccagcaa actgaggctt
1261 gtctgcctag cggccttcat ccttcagaaa tgcaagtttg aggaagacca gaagatggtt
1321 gtctttttct caagttgcga gctggtggag ttccactaca gcctcttcct acagaccctg
1381 ctgagcagct caggggcgcc ggcatcaggg cagttgccat ctgcctccat gcgattaaaa
1441 ttcctacggc tgcatggcgg catggagcag gaggaaagaa cagcagtgtt tcaggaattt
1501 tcacattcca gaagaggcgt ccttctttgc acggatgttg cagctcgggg cttagatctc
1561 cctcaagtca cgtggattgt tcagtacaac gctccatctt cacctgcaga atacatccac
1621 cggattggaa gaaccgcccg gattggctgc catgggagca gcctgctcat tttggctcct
1681 tcggaggcag aatatgtcaa ctcgttggct tctcacaaaa tcaacgtttc tgagattaag
1741 atggaagata ttttgtgtgt tctgacaaga gatgattgtt ttaaagggaa acgatgggga
1801 gcccagaaat cccatgctgt tggcccccag gaaatccgag agcgagccac agtcttgcag
1861 acggtatttg aagattacgt gcactccagt gagaggaggg tctcctgggc aaagaaagct
1921 ctgcagtcct tcatccaagc ctacgccacc taccccaggg agctgaagca catcttccac
1981 gtccgatccc tccaccttgg gcatgtggcg aagagcttcg gactaagaga tgcccccagg
2041 aatcttagtg ccttgactag aaagaagagg aaagcacacg tgaaaaggcc tgaccttcat
2101 aagaagaccc agagtaaaca cagcctcgct gaaatcctac gttcggaata ctcaagcggc
2161 atggaggccg acgtcgccaa ggtcaaaaag caaaacgcac ctggagagcc tggtggccgg
2221 cccctgcagc acagtctgca gccgacaccc tgctttggcc gtgggaaaac attaaaatgg
2281 agaaaaaccc aaaaaggtgt acagcgggac agcaagactt cccagaaagt ttaaaatctc
2341 tctgggtctt cgagtggaac ctggaagccc cgggtggcag tggattgatg tccagttctt
2401 gtcagaggag ccttgtgaaa aataactgcg cctttgcctg aataccacgt ccccaagaat
2461 cagaggggcc acagcccttc tcctccatgg gaggccctgg agcctgatag aaatcagtgg
2521 tgtggggcac tgtagagact agccagctcc cgacggaagg ggtctgtgtc ttgtattgat
2581 cccatcagtg cccggcactc ccttcaccca ggtgctgacg tgccggggtt gagctggcac
2641 cccgggatgt gatgtaagaa cgccctgcgc gtcagcctgg aacgggcttg attgctgccc
2701 ttaactgtgt tctgaagttt cacagcttgg cttcagccta tcagcgcata cattggcatg
2761 aattttgtga attagggtgt taaaaactgg aattgaattt gtacaaaaaa aaaaaaaaaa
2821 aaaa
//