LOCUS BC012629 1854 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens COP9 constitutive photomorphogenic homolog subunit 2
(Arabidopsis), mRNA (cDNA clone MGC:13684 IMAGE:4245220), complete
cds.
ACCESSION BC012629
VERSION BC012629.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1854)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1854)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 19 Row: g Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4759263.
FEATURES Location/Qualifiers
source 1..1854
/db_xref="H-InvDB:HIT000035914"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:13684 IMAGE:4245220"
/tissue_type="Skeletal Muscle"
/clone_lib="NIH_MGC_81"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1854
/gene="COPS2"
/gene_synonym="ALIEN"
/gene_synonym="CSN2"
/gene_synonym="SGN2"
/gene_synonym="TRIP15"
/db_xref="GeneID:9318"
/db_xref="HGNC:HGNC:30747"
/db_xref="MIM:604508"
CDS 17..1348
/gene="COPS2"
/gene_synonym="ALIEN"
/gene_synonym="CSN2"
/gene_synonym="SGN2"
/gene_synonym="TRIP15"
/codon_start=1
/product="COP9 constitutive photomorphogenic homolog
subunit 2 (Arabidopsis)"
/protein_id="AAH12629.1"
/db_xref="GeneID:9318"
/db_xref="HGNC:HGNC:30747"
/db_xref="MIM:604508"
/translation="MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKE
DDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSA
VTRNYSEKSINSILDYISTSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYL
EREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALY
EQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTC
LKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNH
SNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQC
ILDNTIHGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAVVSKLA"
BASE COUNT 681 a 315 c 353 g 505 t
ORIGIN
1 ggggctcccg gccaagatgt ctgacatgga ggatgatttc atgtgcgatg atgaggagga
61 ctacgacctg gaatactctg aagatagtaa ctccgagcca aatgtggatt tggaaaatca
121 gtactataat tccaaagcat taaaagaaga tgacccaaaa gcggcattaa gcagtttcca
181 aaaggttttg gaacttgaag gtgaaaaagg agaatgggga tttaaagcac tgaaacaaat
241 gattaagatt aacttcaagt tgacaaactt tccagaaatg atgaatagat ataagcagct
301 attgacctat attcggagtg cagtcacaag aaattattct gaaaaatcca ttaattctat
361 tcttgattat atctctactt ctaaacagat ggatttactg caggaattct atgaaacaac
421 actggaagct ttgaaagatg ctaagaatga tagactgtgg tttaagacaa acacaaagct
481 tggaaaatta tatttagaac gagaggaata tggaaagctt caaaaaattt tacgccagtt
541 acatcagtcg tgccagactg atgatggaga agatgatctg aaaaaaggta cacagttatt
601 agaaatatat gctttggaaa ttcaaatgta cacagcacag aaaaataaca aaaaacttaa
661 agcactctat gaacagtcac ttcacatcaa gtctgccatc cctcatccac tgattatggg
721 agttatcaga gaatgtggtg gtaaaatgca cttgagggaa ggtgaatttg aaaaggcaca
781 cactgatttt tttgaagcct tcaagaatta tgatgaatct ggaagtccaa gacgaaccac
841 ttgcttaaaa tatttggtct tagcaaatat gcttatgaaa tcgggaataa atccatttga
901 ctcacaggag gccaagccgt acaaaaatga tccagaaatt ttagcaatga cgaatttagt
961 aagtgcctat cagaataatg acatcactga atttgaaaag attctaaaaa caaatcacag
1021 caacatcatg gatgatcctt tcataagaga acacattgaa gagcttttgc gaaacatcag
1081 aacacaagtg cttataaaat taattaagcc ttacacaaga atacatattc cttttatttc
1141 taaggagtta aacatagatg tagctgatgt ggagagcttg ctggtgcagt gcatattgga
1201 taacactatt catggccgaa ttgatcaagt caaccaactc cttgaactgg atcatcagaa
1261 gaggggtggt gcacgatata ctgcactaga taaatggacc aaccaactaa attctctcaa
1321 ccaggctgta gtcagtaaac tggcttaaca gagaacaagc ttttacagac gtccttaagg
1381 caacagtgca gagatgtaat ccttaaaaga actgggaatg gcaaaactac tgtcggttga
1441 tgtgtcctga aaattattgg agttatggca gaagtgcttt tttgatcaac tggtttgtgt
1501 tttgctgctg catttatccc aagaaaaaca gctttaatct ccagaagaaa accaaaatac
1561 catgggattt atgctgtatt gacatcttgc cctaaacgta caacatcata gtaatttgtc
1621 atgggcaaca tgaccagaga gaagattttt gtcatgattt taaatacact gacacgctac
1681 tgttggttaa atttaaacat gttttacctg cagaaattct ctcacaaata acctgcaata
1741 acttgaaatg catacccttt tgaacacttc cttttctcat gtataaatta aaatgtttgc
1801 tgcattttgc aaaatgtcaa ttctccaaaa aaaaaaaaaa aaaaaaaaaa aaaa
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