LOCUS BC012561 1646 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens penta-EF-hand domain containing 1, mRNA (cDNA clone
MGC:13412 IMAGE:4273213), complete cds.
ACCESSION BC012561
VERSION BC012561.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1646)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1646)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 19 Row: j Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6912581.
FEATURES Location/Qualifiers
source 1..1646
/db_xref="H-InvDB:HIT000035870"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:13412 IMAGE:4273213"
/tissue_type="Prostate"
/clone_lib="NIH_MGC_83"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1646
/gene="PEF1"
/gene_synonym="PEF1A"
/gene_synonym="PEFLIN"
/db_xref="GeneID:553115"
/db_xref="HGNC:HGNC:30009"
/db_xref="MIM:610033"
CDS 19..873
/gene="PEF1"
/gene_synonym="PEF1A"
/gene_synonym="PEFLIN"
/codon_start=1
/product="penta-EF-hand domain containing 1"
/protein_id="AAH12561.1"
/db_xref="GeneID:553115"
/db_xref="HGNC:HGNC:30009"
/db_xref="MIM:610033"
/translation="MASYPYRQGCPGAAGQAPGAPPGSYYPGPPNSGGQYGSGLPPGG
GYGGPAPGGPYGPPAGGGPYGHPNPGMFPSGTPGGPYGGAAPGGPYGQPPPSSYGAQQ
PGLYGQGGAPPNVDPEAYSWFQSVDSDHSGYISMKELKQALVNCNWSSFNDETCLMMI
NMFDKTKSGRIDVYGFSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQMGYNLS
PQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFV
TMTASRML"
BASE COUNT 376 a 465 c 430 g 375 t
ORIGIN
1 ggggacgtca gaatcaccat ggccagctat ccttaccggc agggctgccc aggagctgca
61 ggacaagcac caggagcccc tccgggtagc tactaccctg gaccccccaa tagtggaggg
121 cagtatggta gtgggctacc ccctggtggt ggttatgggg gtcctgcccc tggagggcct
181 tatggaccac cagctggtgg agggccctat ggacacccca atcctgggat gttcccctct
241 ggaactccag gaggaccata tggcggtgca gctcccgggg gcccctatgg tcagccacct
301 ccaagttcct acggtgccca gcagcctggg ctttatggac agggtggcgc ccctcccaat
361 gtggatcctg aggcctactc ctggttccag tcggtggact cagatcacag tggctatatc
421 tccatgaagg agctaaagca ggccctggtc aactgcaatt ggtcttcatt caatgatgag
481 acctgcctca tgatgataaa catgtttgac aagaccaagt caggccgcat cgatgtctac
541 ggcttctcag ccctgtggaa attcatccag cagtggaaga acctcttcca gcagtatgac
601 cgggaccgct cgggctccat tagctacaca gagctgcagc aagctctgtc ccaaatgggc
661 tacaacctga gcccccagtt cacccagctt ctggtctccc gctactgccc acgctctgcc
721 aatcctgcca tgcagcttga ccgcttcatc caggtgtgca cccagctgca ggtgctgaca
781 gaggccttcc gggagaagga cacagctgta caaggcaaca tccggctcag cttcgaggac
841 ttcgtcacca tgacggcttc tcggatgcta tgacccaacc atctgtggag agtggagtgc
901 accagggacc tttcctggct tcttagagtg agagaagtat gtggacatct cttcttttcc
961 tgtccctcta gaagaacatt ctcccttgct tgatgcaaca ctgttccaaa agagggtgga
1021 gagtcctgca tcatagccac caaatagtga ggaccggggc tgaggccaca cagatagggg
1081 cctgatggag gagaggatag aagttgaatg tcctgatggc catgagcagt tgagtggcac
1141 agcctggcac caggagcagg tccttgtaat ggagttagtg tccagtcagc tgagctccac
1201 cctgatgcca gtggtgagtg ttcatcggcc tgttaccgtt agtacctgtg ttccctcacc
1261 aggccatcct gtcaaacgag cccattttct ccaaagtgga atctgaccaa gcatgagaga
1321 gatctgtcta tgggaccagt ggcttggatt ctgccacacc cataaatcct tgtgtgttaa
1381 cttctagctg cctggggctg gccctgctca gacaaatctg ctccctgggc atctttggcc
1441 aggcttctgc cctctgcagc tgggacccct cacttgcctg ccatgctctg ctcggcttca
1501 gtctccagga gacagtggtc acctctccct gccaatactt tttttaattt gcattttttt
1561 tcatttgggg ccaaaagtcc agtgaaattg taagcttcaa taaaaggatg aaactctaaa
1621 aaaaaaaaaa aaaaaaaaaa aaaaaa
//