LOCUS BC012447 916 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens SP110 nuclear body protein, mRNA (cDNA clone
IMAGE:3881219), partial cds.
ACCESSION BC012447
VERSION BC012447.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 916)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 916)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC012447.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: n Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 17986255.
FEATURES Location/Qualifiers
source 1..916
/db_xref="H-InvDB:HIT000087856"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3881219"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_68"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>916
/gene="SP110"
/gene_synonym="FLJ22835"
/gene_synonym="IFI41"
/gene_synonym="IFI75"
/db_xref="GeneID:3431"
/db_xref="MIM:604457"
CDS 79..>916
/gene="SP110"
/gene_synonym="FLJ22835"
/gene_synonym="IFI41"
/gene_synonym="IFI75"
/codon_start=1
/product="SP110 protein"
/protein_id="AAH12447.1"
/db_xref="GeneID:3431"
/db_xref="MIM:604457"
/translation="MFTMTRAMEEALFQHFMHQKLGIAYAIHKPFPFFEGLLDNSIIT
KRMYMESLEACRNLIPVSRVVHNILTQLERTFNLSLLVTLFSQINLREYPNLVTIYRS
FKRVGASYERQSRDTPILLEAPTGLAEGSSLHTPLALPPPQPPQPSCSPCAPRVSEPG
TSSQQSDEILSESPSPSDPVLPLPALIQEGRSTSVTNDKLTSKMNAEEDSEEMPSLLT
STVQVASDNLIPQIRDKEDPQEMPHSPLGSMPEIRDNSPEPNDPEEPQEVSSTPSDKK
KKK"
misc_feature 94..396
/gene="SP110"
/gene_synonym="FLJ22835"
/gene_synonym="IFI41"
/gene_synonym="IFI75"
/note="Sp100; Region: Sp100 domain. The function of this
domain is unknown. It is about 105 amino acid residues in
length and is predicted to be predominantly alpha helical.
This domain is usually found at the amino terminus of
protein that contain a SAND domain pfam01342"
/db_xref="CDD:pfam03172"
BASE COUNT 272 a 267 c 196 g 181 t
ORIGIN
1 cggacgcgtg ggatcttgag gagtgatccc tgtcccagcc cctggaaagg ggcaggaacg
61 acaaactcaa agtccaggat gttcaccatg acaagagcca tggaagaggc tctttttcag
121 cacttcatgc accagaagct ggggatcgcc tatgccatac acaagccatt tcccttcttt
181 gaaggcctcc tagacaactc catcatcact aagagaatgt acatggaatc tctggaagcc
241 tgtagaaatt tgatccctgt atccagagtg gtgcacaaca ttctcaccca actggagagg
301 acttttaacc tgtctcttct ggtgacattg ttcagtcaaa ttaacctgcg tgaatatccc
361 aatctggtga cgatttacag aagcttcaaa cgtgttggtg cttcctatga acggcagagc
421 agagacacac caatcctact tgaagcccca actggcctag cagaaggaag ctccctccat
481 accccactgg cgctgccccc accacaaccc cctcaaccaa gctgttcacc ctgtgcgcca
541 agagtcagtg agcctggaac atcctcccag caaagcgatg agatcctgag tgagtcgccc
601 agcccatctg accctgtcct gcctctccct gcactcatcc aggaaggaag aagcacttca
661 gtgaccaatg acaagttaac atccaaaatg aatgcggaag aagactcaga agagatgccc
721 agcctcctca ctagcactgt gcaagtggcc agtgacaacc tgatccccca aataagagat
781 aaagaagacc ctcaagagat gccccactct cccttgggct ctatgccaga gataagagat
841 aattctccag aaccaaatga cccagaagag ccccaggagg tgtccagcac accttcagac
901 aaaaaaaaaa aaaaaa
//