LOCUS BC012384 1119 bp mRNA linear HUM 12-OCT-2006
DEFINITION Homo sapiens programmed cell death 6, mRNA (cDNA clone MGC:9123
IMAGE:3859672), complete cds.
ACCESSION BC012384
VERSION BC012384.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1119)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1119)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: d Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22027539.
FEATURES Location/Qualifiers
source 1..1119
/db_xref="H-InvDB:HIT000035794"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9123 IMAGE:3859672"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_66"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1119
/gene="PDCD6"
/gene_synonym="ALG-2"
/gene_synonym="MGC9123"
/gene_synonym="PEF1B"
/db_xref="GeneID:10016"
/db_xref="HGNC:HGNC:8765"
/db_xref="MIM:601057"
CDS 69..644
/gene="PDCD6"
/gene_synonym="ALG-2"
/gene_synonym="MGC9123"
/gene_synonym="PEF1B"
/codon_start=1
/product="programmed cell death 6"
/protein_id="AAH12384.1"
/db_xref="GeneID:10016"
/db_xref="HGNC:HGNC:8765"
/db_xref="MIM:601057"
/translation="MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVIS
DTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTY
DRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQR
LTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV"
BASE COUNT 280 a 259 c 296 g 284 t
ORIGIN
1 gaagcggagt cggcctgaga ggtctctcgt cgctgcaggc gcctcagccc agccgcgtgc
61 cttggcccat ggccgcctac tcttaccgcc ccggccctgg ggccggccct gggcctgctg
121 caggcgcggc gctgccggac cagagcttcc tgtggaacgt tttccagagg gtcgataaag
181 acaggagtgg agtgatatca gacaccgagc ttcagcaagc tctctccaac ggcacgtgga
241 ctccctttaa tccagtgact gtcaggtcga tcatatccat gtttgaccgt gagaacaagg
301 ccggcgtgaa cttcagcgag ttcacgggtg tgtggaagta catcacggac tggcagaacg
361 tcttccgcac gtacgaccgg gacaactccg ggatgatcga taagaacgag ctgaagcagg
421 ccctctcagg tttcggctac cggctctctg accagttcca cgacatcctc attcgaaagt
481 ttgacaggca gggacggggg cagattgcct tcgacgactt catccagggc tgcatcgtcc
541 tgcagaggtt gacggatata ttcagacgtt acgacacgga tcaggacggc tggattcagg
601 tgtcgtacga acagtacctg tccatggtct tcagtatcgt atgaccctgg cctctcgtga
661 agagcagcac aacatggaaa gagccaaaat gtcacagttc ctatctgtga gggaatggag
721 cacaggtgca gttagatgct gttcttcctt tagattttgt cacgtgggga cccagctgta
781 catatgtgga taagctgatt aatggttttg caactgtaat agtagctgta tcgttctaat
841 gcagacattg gatttggtga ctgtctcatt gtgccatgag gtaaatgtaa tgtttcaggc
901 attctgcttg caaaaaaatc tatcatgtgc ttttctagat gtctctggtt ctatagtgca
961 aatgctttta ttagccaata ggaattttaa aataacatgg aacttacaca aaaggctttt
1021 catgtgcctt acttttttaa aaaggagttt attgtattca ttggaatatg tgacgtaagc
1081 aataaaggga atgttagacg tgtaaaaaaa aaaaaaaaa
//