LOCUS BC012369 1351 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens proteasome (prosome, macropain) 26S subunit,
non-ATPase, 6, mRNA (cDNA clone MGC:9794 IMAGE:3858094), complete
cds.
ACCESSION BC012369
VERSION BC012369.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1351)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1351)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: c Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..1351
/db_xref="H-InvDB:HIT000035784"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9794 IMAGE:3858094"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_66"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1351
/gene="PSMD6"
/gene_synonym="KIAA0107"
/gene_synonym="p44S10"
/gene_synonym="S10"
/gene_synonym="SGA-113M"
/db_xref="GeneID:9861"
/db_xref="HGNC:HGNC:9564"
CDS 36..1205
/gene="PSMD6"
/gene_synonym="KIAA0107"
/gene_synonym="p44S10"
/gene_synonym="S10"
/gene_synonym="SGA-113M"
/codon_start=1
/product="proteasome (prosome, macropain) 26S subunit,
non-ATPase, 6"
/protein_id="AAH12369.1"
/db_xref="GeneID:9861"
/db_xref="HGNC:HGNC:9564"
/translation="MPLENLEEEGLPKNPDLRIAQLRFLLSLPEHRGDAAVRDELMAA
VRDNNMAPYYEALCKSLDWQIDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRD
AMMAKAEYLCRIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRN
TEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKT
FVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLA
VVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQEL
SRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM"
BASE COUNT 425 a 266 c 319 g 341 t
ORIGIN
1 gttgtgtcct gtcagccgct gtccccttcg ccgcgatgcc gctggagaac ctggaggagg
61 agggtctgcc caagaacccc gacttgcgta tcgcgcagct gcgcttcctg ctcagcctgc
121 ccgagcaccg cggagacgct gccgtgcgcg acgagctgat ggcggccgtc cgcgataaca
181 acatggctcc ttactatgaa gccttgtgca aatccctcga ctggcagata gacgtggacc
241 tactcaataa aatgaagaag gcaaatgaag atgagttgaa gcgtttggat gaggagctgg
301 aagatgcaga gaagaatcta ggagagagcg aaattcgcga tgcaatgatg gcaaaggccg
361 agtacctctg ccggataggt gacaaagagg gagctctgac agcctttcgc aagacatatg
421 acaaaactgt ggccctgggt caccgattgg atattgtatt ctatctcctt aggattggct
481 tattttatat ggataatgat ctcatcacac gaaacacaga aaaggccaaa agcttaatag
541 aagaaggagg agactgggac aggagaaacc gcctaaaagt gtatcagggt ctttattgtg
601 tggctattcg tgatttcaaa caggcagctg aactcttcct tgacactgtt tcaacattta
661 catcctatga actcatggat tataaaacat ttgtgactta tactgtctat gtcagtatga
721 ttgccttaga aagaccagat ctcagggaaa aggtcattaa aggagcagag attcttgaag
781 tgttgcacag tcttccagca gttcggcagt atctgttttc actctatgaa tgccgttact
841 ctgttttctt ccaatcatta gcggttgtgg aacaggaaat gaaaaaggac tggctttttg
901 cccctcatta tcgatactat gtaagagaaa tgagaattca tgcatacagt cagctgctgg
961 aatcatatag gtcattaacc cttggctata tggcagaagc gtttggtgtt ggtgtggaat
1021 tcattgatca ggaactgtcc aggtttattg ctgccgggag actacactgc aaaatagata
1081 aagtgaatga aatagtagaa accaacagac ctgatagcaa gaactggcag taccaagaaa
1141 ctatcaagaa aggagatctg ctactaaaca gagttcaaaa actttccaga gtaattaata
1201 tgtaaagcca tgtaactaac aaaggatttg ctttagagat aattatttgg aatttttata
1261 gcttacttca caatgtgccc aggtcagctg tataaaataa atactgcatt gttgtttcaa
1321 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//