LOCUS BC012187 3694 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens PHD finger protein 21B, mRNA (cDNA clone MGC:20476
IMAGE:4634631), complete cds.
ACCESSION BC012187
VERSION BC012187.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3694)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3694)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: j Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19923936.
FEATURES Location/Qualifiers
source 1..3694
/db_xref="H-InvDB:HIT000035723"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20476 IMAGE:4634631"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3694
/gene="PHF21B"
/gene_synonym="BHC80L"
/gene_synonym="FLJ34161"
/gene_synonym="PHF4"
/db_xref="GeneID:112885"
/db_xref="HGNC:HGNC:25161"
CDS 152..1747
/gene="PHF21B"
/gene_synonym="BHC80L"
/gene_synonym="FLJ34161"
/gene_synonym="PHF4"
/codon_start=1
/product="PHD finger protein 21B"
/protein_id="AAH12187.1"
/db_xref="GeneID:112885"
/db_xref="HGNC:HGNC:25161"
/translation="MELQSRPEALAVELARHQNGDLKKQLHERQPRIAALSDKQALGT
ITAVPVTGPQVSSLQRLAGQGAAVLPQVRPKTLIPDSLPVAPGRDRPPKQPPTFQKAT
VVSVKNPSPALPTANNTVSHVPAPGSQPQALAEPAALASPLSSAGVAYAIISTSPSNA
AAMAPSTAVSVVSDSIKVQPLLISADNKPPPRLLSSPHPATHHCPLHPSSLPLTPPSP
SLSPSPLHGIFQVIIIQPQVQTQPESTAESRPPTEEPSQGAQATKKKKEDRPPTQENP
EKIAFMVALGLVTTEHLEEIQSKRQERKRRSTANPAYSGLLETERKRLASNYLNNPLF
LTARANEDPCWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWV
CPRCQQKALKKDEGVPWTGMLAIVHSYVTHKTVKEEEKQKLLQRGSELQNEHQQLEER
DRRLASAVQKCLELKTSLLARQRGTQSSLDRLRALLRLIQGEQLLQVTMTTTSPAPLL
AGPWTKPSVAATHPTVQHPQGHN"
BASE COUNT 792 a 1146 c 1046 g 710 t
ORIGIN
1 tccctttcgg ccgtggggga gggggctcgt gtccccccca acccagcccg gaggccgcgt
61 ccgcccgcgc ccgctctggc ccccgcggag ccgcgcaact tcccgggagc ccgggccaaa
121 gtgagcgcaa agtgctgccc aagttgccgg gatggagctg cagagccggc ccgaggcgct
181 cgccgtggaa ctcgcgcgcc accagaacgg cgacctcaag aagcagctcc acgaaaggca
241 gccgcggatc gccgcgctca gcgacaaaca agctttggga acgatcactg cagtgcctgt
301 cacgggtcct caggtcagct ccttgcagag gttggccggg caaggagcgg cagtgctacc
361 tcaggttagg ccaaagactc tgattccaga cagcctcccc gttgccccgg gccgggaccg
421 gccacccaag cagcccccaa cattccagaa ggccaccgtg gtcagcgtca agaaccccag
481 cccagccctc cccaccgcca acaacactgt cagccatgtg ccagcgcccg gcagccagcc
541 ccaggccctc gccgagcccg ccgccctcgc ctctccgctg agcagtgcgg gggtggccta
601 cgccatcatc tccacctccc ccagcaatgc cgccgccatg gcccccagca ccgccgtgtc
661 tgtggtcagt gacagcatca aagtccagcc cctcctcatc agtgctgaca acaagcctcc
721 tccacgcctc ctctcttccc ctcaccccgc aacccatcac tgtcccctcc acccctcctc
781 tcttcccctc acccctccct ccccatcact gtccccttca cccctccatg gcatcttcca
841 ggtcatcatc attcagcctc aagtgcagac gcagcccgag agcacggcag agtcgcggcc
901 gcccacagag gagccatctc agggagctca ggccaccaaa aagaagaagg aagaccggcc
961 cccgacccag gagaaccccg agaaaatcgc cttcatggta gcgctaggcc tggttaccac
1021 ggaacatttg gaagaaatcc agagcaagcg acaggagcgg aagagaagaa gcacagccaa
1081 ccctgcctac agcggcctcc tggagaccga gaggaaacgg ctggcctcca actatctcaa
1141 caaccccctg ttcctcacag cgagagccaa tgaggacccc tgctggaaga acgagatcac
1201 ccacgatgag cactgtgccg cctgcaagcg aggggccaac ctgcagccct gcggcacctg
1261 cccgggggcc taccacctca gctgcctgga gccgcccctc aagacggcgc ccaagggcgt
1321 gtgggtgtgc cccaggtgcc agcagaaggc cttaaagaaa gacgagggtg tgccctggac
1381 tgggatgctg gccatcgtgc actcttatgt cacccacaag acagtcaaag aagaggagaa
1441 gcagaagctg ctgcaacgag gcagtgagct gcagaacgag caccagcagc tggaggagcg
1501 ggaccggcgg ctggcgtcag cagtgcagaa atgcctggag ttgaagacaa gcctgctggc
1561 ccgccagagg ggcacccagt catccctgga ccgcctgcgg gccctcctga gactgataca
1621 gggcgagcag ctgctccagg tcaccatgac gaccactagc cctgccccac tgctggccgg
1681 gccctggacc aagccctcag tggcagccac acaccccacc gtccagcacc cccagggcca
1741 caactgaccc cgagggacca gtcttcatac ccacggaaag ttattgggac cctgcttaca
1801 cagcctgggg gttctgtcgg ccttaattca taaacactat gaatttcaga caaaaattaa
1861 ccagacagag gagaggaggg aggaagagct gggcgagagg cctagagcca ggaccaggtg
1921 ggggtgcggc cctgtgccct ccaaattcac agggggtacc taggagccag gtggggtacg
1981 acaggctggg gcacacagtc tccccccggc cacctcgggg ctgcctgggc ctctggcttc
2041 caggccctgc tctccacggc ctccctctgg cccgttggag gggcaggctg aggctgtgga
2101 ggggacaagc acgcccccca gaacgcagtc tccactgagg gcaccgccta ttggtgtcct
2161 gtgggagggc gagctgagaa cacatggact agctgagtgg tagcggtagt tgggacgaga
2221 agcggggtag tggatctagg tagttcctca atgccccacg ctcctaggag gtccccctgg
2281 ggtgggcggg cgggcctggg gcactccgtc gcctttgcag aaccacctgg gcccctttct
2341 gtcagtatta ttagggttac gaattgcagc tgtttaactt gaaagacact gtcggaggtg
2401 agcatctggg cgccgggacg ctgcagtgat ccccgccaga gcctgtgccc ttcctgctcc
2461 gtctttgggg tcctcaaggc tgcctccttc cttttgccaa tctcttggac tcagtttgcc
2521 gttgatgcgt ttttctcatg gagtttctgg gcagagtgga gctgcaaccc tgttgtgggg
2581 ggcagcattt ggcaggtttt ctccttgggg ttgaatcatt caacttaacg actgaagccc
2641 tttcttgtct cctttggaag agccgataag tattccactc ctcccttttt gccagtgcag
2701 acactatgcc aaaaaataac ttcacacttt tgtatggcgt ttttattgtg agatatttaa
2761 tgtgaatggt tggggggact ctggctgact tcctttctgc ttctagtagt ctctgcttca
2821 aggtacaaat gggaacacct cccctcggga agcctggcca agctggaaga tccggcaggt
2881 tttttacgag ccgggtggag ggttggggag gaaagaaagg gcggtggcct cgggaggttc
2941 cggccttcgg ggaccagact tgctgccaag ggcttctgca tccagggtgg gcagtggcag
3001 cttgtcaccc ttgcccgatt cccacatccc agtcctgagg gactcagcac aacaggataa
3061 gcgtccagga gccacgggct cccaccccga gcatatcaca tggtgccgaa ttgcactgaa
3121 cacgcgtgtg tgcatcgcac gcggccacga ccacagacac gcatgcacac acgcagaggt
3181 gcagagcgag gaggccggca aatcccgcag ctgccacggt ccctcctgtc attctcacga
3241 ctccgggaga aactgtgctg tatgatacag atctatttta atacacttac cactgggtga
3301 acaagatttt tatattcttt tattgatgaa caaagtgaac cgtgtgaggc acacgtcttc
3361 tatattggct actctgtgcc aagtatgcat taccgcgtgg cttgcgatgt ccatgtcttc
3421 agcttccttt tctgttggtt tggttttctt cgcggatgga ttgagttaca tgttttaaca
3481 gtgtaatggg aggatctgaa aggttggacc cgggaggggt agctgccgat gtgtcttgag
3541 attgttaggt tttttttgga ccaaggagga ccgtccagtg ggtagtgagg atagagaaaa
3601 agtgtttgtc ttaaatacgc caatgtagtt ttccttcttt acaatgtatt aaactcgatc
3661 gatgatttca aaaacaaaaa aaaaaaaaaa aaaa
//