LOCUS BC012170 1058 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens chromosome 3 open reading frame 54, mRNA (cDNA clone
MGC:20416 IMAGE:4642270), complete cds.
ACCESSION BC012170
VERSION BC012170.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1058)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1058)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: l Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42766423.
FEATURES Location/Qualifiers
source 1..1058
/db_xref="H-InvDB:HIT000035709"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20416 IMAGE:4642270"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1058
/gene="C3orf54"
/db_xref="GeneID:389119"
/db_xref="HGNC:HGNC:32480"
CDS 134..997
/gene="C3orf54"
/codon_start=1
/product="chromosome 3 open reading frame 54"
/protein_id="AAH12170.2"
/db_xref="GeneID:389119"
/db_xref="HGNC:HGNC:32480"
/translation="MDMHSARLDSFLSQLRWELLCGRDTGSPSMPGPLQPTSQTGPDV
QPSHQLRASGALEEDSVCCVEEEEEEEEEAVVTEDRDAALGGPREHALDWDSGFSEVS
GSTWREEELPVSQRPAPSAQPLRRQCLSVSGLPMPSRAPVASVPPVHHPRPKSTPDAC
LEHWQGLEAEDWTAALLNRGRSRQPLVLGDNCFADLVHNWMELPETGSEGGDGGGHRA
RARPPQFLLGLSEQLRRRLARARRTAMAGKRLSCPPRPEPELPADVSRFAALMSCRSR
QPIICNDVSYL"
BASE COUNT 214 a 328 c 337 g 179 t
ORIGIN
1 gggagctacg gagagcgagg agtcgcgcag gcaggcggag gctgagggcg ccgctggccg
61 gccctcccag ccctctccgc gcggctccgc cggggttcca agaggagcta gtaggttcgg
121 tgggggccct ggcatggaca tgcacagcgc tcggcttgac agcttcctta gccagctccg
181 ctgggaactg ttgtgtggtc gggacacagg ctcaccctca atgcctggtc ccctgcagcc
241 aacctcccaa actggcccag atgtgcagcc cagccaccag cttagggcct cgggtgcctt
301 ggaagaggac tcagtctgct gtgtggagga ggaggaagag gaggaggagg aagcagtggt
361 gacagaagac agggatgcag ccttgggagg ccccagggag catgccctgg actgggactc
421 tggcttctcg gaggtgtcag gcagcacatg gcgagaggaa gaactgcctg tatcccagcg
481 cccagcaccc tcagcacagc cccttcgtag gcagtgcctc tcagtcagtg gcctccccat
541 gcccagcagg gcccctgtag ccagtgtacc acctgtccac catccacggc ccaagtccac
601 cccagacgcc tgcctggagc actggcaggg actggaagca gaggactgga cagcagccct
661 actgaacagg ggtcgcagtc gccagcccct ggtactaggg gacaattgct ttgctgactt
721 ggtgcacaac tggatggagc tgcctgagac agggagtgaa gggggtgacg gaggtgggca
781 ccgtgcccgt gctcggcccc ctcagttcct gcttggcctc tctgagcagc ttcggcgccg
841 gctggccagg gctcggcgga cagctatggc aggaaagcgg ctgtcatgcc cacctcgccc
901 agaacctgaa ctgcctgcgg atgtctcacg ctttgcagct ctcatgagct gtcgtagccg
961 ccagcccatc atctgcaatg atgtcagcta cctctgaccc tgccctccag cctgggacaa
1021 taaaagcctt ttttctagac aaaaaaaaaa aaaaaaaa
//