LOCUS BC012170 1058 bp mRNA linear HUM 03-NOV-2008 DEFINITION Homo sapiens chromosome 3 open reading frame 54, mRNA (cDNA clone MGC:20416 IMAGE:4642270), complete cds. ACCESSION BC012170 VERSION BC012170.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1058) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1058) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-AUG-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 29 Row: l Column: 14 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 42766423. FEATURES Location/Qualifiers source 1..1058 /db_xref="H-InvDB:HIT000035709" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:20416 IMAGE:4642270" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_20" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1058 /gene="C3orf54" /db_xref="GeneID:389119" /db_xref="HGNC:HGNC:32480" CDS 134..997 /gene="C3orf54" /codon_start=1 /product="chromosome 3 open reading frame 54" /protein_id="AAH12170.2" /db_xref="GeneID:389119" /db_xref="HGNC:HGNC:32480" /translation="MDMHSARLDSFLSQLRWELLCGRDTGSPSMPGPLQPTSQTGPDV QPSHQLRASGALEEDSVCCVEEEEEEEEEAVVTEDRDAALGGPREHALDWDSGFSEVS GSTWREEELPVSQRPAPSAQPLRRQCLSVSGLPMPSRAPVASVPPVHHPRPKSTPDAC LEHWQGLEAEDWTAALLNRGRSRQPLVLGDNCFADLVHNWMELPETGSEGGDGGGHRA RARPPQFLLGLSEQLRRRLARARRTAMAGKRLSCPPRPEPELPADVSRFAALMSCRSR QPIICNDVSYL" BASE COUNT 214 a 328 c 337 g 179 t ORIGIN 1 gggagctacg gagagcgagg agtcgcgcag gcaggcggag gctgagggcg ccgctggccg 61 gccctcccag ccctctccgc gcggctccgc cggggttcca agaggagcta gtaggttcgg 121 tgggggccct ggcatggaca tgcacagcgc tcggcttgac agcttcctta gccagctccg 181 ctgggaactg ttgtgtggtc gggacacagg ctcaccctca atgcctggtc ccctgcagcc 241 aacctcccaa actggcccag atgtgcagcc cagccaccag cttagggcct cgggtgcctt 301 ggaagaggac tcagtctgct gtgtggagga ggaggaagag gaggaggagg aagcagtggt 361 gacagaagac agggatgcag ccttgggagg ccccagggag catgccctgg actgggactc 421 tggcttctcg gaggtgtcag gcagcacatg gcgagaggaa gaactgcctg tatcccagcg 481 cccagcaccc tcagcacagc cccttcgtag gcagtgcctc tcagtcagtg gcctccccat 541 gcccagcagg gcccctgtag ccagtgtacc acctgtccac catccacggc ccaagtccac 601 cccagacgcc tgcctggagc actggcaggg actggaagca gaggactgga cagcagccct 661 actgaacagg ggtcgcagtc gccagcccct ggtactaggg gacaattgct ttgctgactt 721 ggtgcacaac tggatggagc tgcctgagac agggagtgaa gggggtgacg gaggtgggca 781 ccgtgcccgt gctcggcccc ctcagttcct gcttggcctc tctgagcagc ttcggcgccg 841 gctggccagg gctcggcgga cagctatggc aggaaagcgg ctgtcatgcc cacctcgccc 901 agaacctgaa ctgcctgcgg atgtctcacg ctttgcagct ctcatgagct gtcgtagccg 961 ccagcccatc atctgcaatg atgtcagcta cctctgaccc tgccctccag cctgggacaa 1021 taaaagcctt ttttctagac aaaaaaaaaa aaaaaaaa //