LOCUS BC012154 2102 bp mRNA linear HUM 04-AUG-2008
DEFINITION Homo sapiens X-ray repair complementing defective repair in Chinese
hamster cells 6, mRNA (cDNA clone MGC:20380 IMAGE:4561541),
complete cds.
ACCESSION BC012154
VERSION BC012154.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2102)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2102)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC012154.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: f Column: 24.
FEATURES Location/Qualifiers
source 1..2102
/db_xref="H-InvDB:HIT000035696"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20380 IMAGE:4561541"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2102
/gene="XRCC6"
/gene_synonym="CTC75"
/gene_synonym="CTCBF"
/gene_synonym="KU70"
/gene_synonym="ML8"
/gene_synonym="TLAA"
/db_xref="GeneID:2547"
/db_xref="HGNC:HGNC:4055"
/db_xref="MIM:152690"
CDS 17..1846
/gene="XRCC6"
/gene_synonym="CTC75"
/gene_synonym="CTCBF"
/gene_synonym="KU70"
/gene_synonym="ML8"
/gene_synonym="TLAA"
/codon_start=1
/product="X-ray repair complementing defective repair in
Chinese hamster cells 6"
/protein_id="AAH12154.1"
/db_xref="GeneID:2547"
/db_xref="HGNC:HGNC:4055"
/db_xref="MIM:152690"
/translation="MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFLVDA
SKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNI
YVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFK
MSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYR
DIISIAEDEDLRVHFEESSKLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNL
VQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEET
EELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEK
EVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPFTE
KIMATPEQVGKMKAIVEKLRFTYRSDSFENPVLQQHFRNLEALALDLMEPEQAVDLTL
PKVEAMNKRLGSLVDEFKELVYPPDYNPEGKVTKRKHDNEGSGSKRPKVEYSEEELKT
HISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQD"
BASE COUNT 612 a 453 c 548 g 489 t
ORIGIN
1 gtgagcagta gccaacatgt cagggtggga gtcatattac aaaaccgagg gcgatgaaga
61 agcagaggaa gaacaagaag agaaccttga agcaagtgga gactataaat attcaggaag
121 agatagtttg atttttttgg ttgatgcctc caaggctatg tttgaatctc agagtgaaga
181 tgagttgaca ccttttgaca tgagcatcca gtgtatccaa agtgtgtaca tcagtaagat
241 cataagcagt gatcgagatc tcttggctgt ggtgttctat ggtaccgaga aagacaaaaa
301 ttcagtgaat tttaaaaata tttacgtctt acaggagctg gataatccag gtgcaaaacg
361 aattctagag cttgaccagt ttaaggggca gcagggacaa aaacgtttcc aagacatgat
421 gggccacgga tctgactact cactcagtga agtgctgtgg gtctgtgcca acctctttag
481 tgatgtccaa ttcaagatga gtcataagag gatcatgctg ttcaccaatg aagacaaccc
541 ccatggcaat gacagtgcca aagccagccg ggccaggacc aaagccggtg atctccgaga
601 tacaggcatc ttccttgact tgatgcacct gaagaaacct gggggctttg acatatcctt
661 gttctacaga gatatcatca gcatagcaga ggatgaggac ctcagggttc actttgagga
721 atccagcaag ctagaagacc tgttgcggaa ggttcgcgcc aaggagacca ggaagcgagc
781 actcagcagg ttaaagctga agctcaacaa agatatagtg atctctgtgg gcatttataa
841 tctggtccag aaggctctca agcctcctcc aataaagctc tatcgggaaa caaatgaacc
901 agtgaaaacc aagacccgga cctttaatac aagtacaggc ggtttgcttc tgcctagcga
961 taccaagagg tctcagatct atgggagtcg tcagattata ctggagaaag aggaaacaga
1021 agagctaaaa cggtttgatg atccaggttt gatgctcatg ggtttcaagc cgttggtact
1081 gctgaagaaa caccattacc tgaggccctc cctgttcgtg tacccagagg agtcgctggt
1141 gattgggagc tcaaccctgt tcagtgctct gctcatcaag tgtctggaga aggaggttgc
1201 agcattgtgc agatacacac cccgcaggaa catccctcct tattttgtgg ctttggtgcc
1261 acaggaagaa gagttggatg accagaaaat tcaggtgact cctccaggct tccagctggt
1321 ctttttaccc tttgctgatg ataaaaggaa gatgcccttt actgaaaaaa tcatggcaac
1381 tccagagcag gtgggcaaga tgaaggctat cgttgagaag cttcgcttca catacagaag
1441 tgacagcttt gagaaccccg tgctgcagca gcacttcagg aacctggagg ccttggcctt
1501 ggatttgatg gagccggaac aagcagtgga cctgacattg cccaaggttg aagcaatgaa
1561 taaaagactg ggctccttgg tggatgagtt taaggagctt gtttacccac cagattacaa
1621 tcctgaaggg aaagttacca agagaaaaca cgataatgaa ggttctggaa gcaaaaggcc
1681 caaggtggag tattcagaag aggagctgaa gacccacatc agcaagggta cgctgggcaa
1741 gttcactgtg cccatgctga aagaggcctg ccgggcttac gggctgaaga gtggtctgaa
1801 gaagcaggag ctgctggaag ccctcaccaa gcacttccag gactgaccag aggccgcgcg
1861 tccagctgcc cttccgcagt gtggccaggc tgcctggcct tgtcctcagc cagttaaaat
1921 gtgtttctcc tgagctagga agagtctacc cgacataagt cgagggactt tatgtttttg
1981 aggctttctg ttgccatggt gatggtgtag ccctcccact ttgctgttcc ttactttact
2041 gcctgaataa agagccctaa gtttgtacta tatactgtta aaaaaaaaaa aaaaaaaaaa
2101 aa
//