LOCUS BC012137 1792 bp mRNA linear HUM 19-JUN-2006 DEFINITION Homo sapiens syntaxin 5, mRNA (cDNA clone MGC:20229 IMAGE:4560294), complete cds. ACCESSION BC012137 VERSION BC012137.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1792) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1792) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-AUG-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 29 Row: e Column: 12 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis, Similarity but not identity to protein. FEATURES Location/Qualifiers source 1..1792 /db_xref="H-InvDB:HIT000035685" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:20229 IMAGE:4560294" /tissue_type="Kidney, renal cell adenocarcinoma" /clone_lib="NIH_MGC_14" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1792 /gene="STX5" /gene_synonym="SED5" /db_xref="GeneID:6811" /db_xref="HGNC:HGNC:11440" /db_xref="MIM:603189" CDS 135..1202 /gene="STX5" /gene_synonym="SED5" /codon_start=1 /product="syntaxin 5" /protein_id="AAH12137.2" /db_xref="GeneID:6811" /db_xref="HGNC:HGNC:11440" /db_xref="MIM:603189" /translation="MIPRKRYGSKNTDQGVYLGLSKTQVLSPATAGSSSSDIAPLPPP VTLVPPPPDTMSCRDRTQEFLSACKSLQTRQNGIQTNKPALRAVRQRSEFTLMAKRIG KDLSNTFAKLEKLTILAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVRAK GSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRSRREQFSRAPVSA LPLAPNHLGGGAVVLGAESHASKDVAIDMMDSRTSQQLQLIDEQDSYIQSRADTMQNI ESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRW LMVKIFLILIVFFIIFVVFLA" BASE COUNT 418 a 517 c 471 g 386 t ORIGIN 1 gtgacgtggc cgcttccagt ctttggtcgg gtttcggcgg cttcagtgct cggggaggag 61 gcagtgacgg ccggtgagat tggaagtggc ggcggcggca ggcggcagag gggagtccga 121 ggttatgcgt ctcaatgatc ccgcggaaac gctacgggtc taagaacacg gatcagggtg 181 tctacctggg tctctcaaag acacaggtcc tgtcccctgc aactgctggc agtagcagca 241 gcgacatcgc ccctctgccc cccccagtga ccctcgtccc tccccctccc gacaccatgt 301 cctgccggga tcggacccag gagtttctgt ctgcctgcaa gtcgctgcag acccgtcaga 361 atggaatcca gacaaataag ccagctttgc gtgctgtccg acaacgcagt gaattcaccc 421 tcatggccaa gcgcattggg aaagacctta gcaacacatt tgccaagctg gagaagctga 481 caatcttggc aaagcgcaag tccctctttg atgataaagc agtggaaatt gaagagctaa 541 catatatcat caaacaggac atcaatagcc tcaacaaaca aattgctcag ctccaggatt 601 tcgtgagagc caagggcagc cagagtggcc ggcacctgca gacccactcc aacaccattg 661 tggtctcctt gcagtcgaaa ctggcttcta tgtccaatga cttcaaatcg gttttagaag 721 tgaggacaga gaacctgaag cagcagagga gccggagaga gcagttctcc cgggcacctg 781 tgtcagccct gccccttgcc cctaaccacc tgggcggtgg tgctgtggtt ctgggggcag 841 agtcccatgc ctccaaggat gtcgccatcg acatgatgga ctctcggacc agccagcagc 901 tgcagctcat tgacgagcag gattcctaca tccagagtcg ggcagacacc atgcagaaca 961 ttgagtcgac aattgttgag ttgggctcca tctttcagca gttggcacac atggttaagg 1021 aacaggagga aaccattcag aggatcgacg agaacgtgct aggagcccag ctggacgttg 1081 aggccgccca ttcagagatc ctcaagtact tccagtctgt cacctccaac cggtggctca 1141 tggtcaaaat cttcctcatc ctcattgtct tcttcatcat ctttgtggtc ttccttgctt 1201 gaaccctctc tactctgagg cactctgttg gggtttggga ccctcctggg aaggcaagtg 1261 gccagtgctg ccactgagcc tgtgcagggt acttgggaga aaggccctgt ttccctggaa 1321 ctgctaagaa tgaccactgc ccctgatccc ccaccccttg cctctggcca ccctgtcttc 1381 cccccaccac cctcaggcct atgaaacaca cagggttcta gatttgaact ctgctgtgaa 1441 gtgactggaa gggagcagag gccagctggg ggccagtggg ggaggttgtt tccactagga 1501 gatttttata aaccctctcc agcctctccc aaaggaagcg ttggcagcaa agggagatga 1561 tgcccttacc caccttcctg tgagtgaaga gaggaagcag ccccagggac caattttccc 1621 aattgacctc tttcttcctc tttcaccatg tgaggcaggg agccctgagc ccttcagctg 1681 cctgcacaac ccctgacatt ggctgctggt gactcaatct gccaaatgtg ctgcagctcg 1741 ttttctccca attacagcaa gactgtcagc ctcaaaaaaa aaaaaaaaaa aa //