LOCUS BC012121 2209 bp mRNA linear HUM 05-SEP-2008
DEFINITION Homo sapiens solute carrier family 9 (sodium/hydrogen exchanger),
member 1, mRNA (cDNA clone MGC:20164 IMAGE:4652523), complete cds.
ACCESSION BC012121
VERSION BC012121.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2209)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2209)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: o Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27777631.
FEATURES Location/Qualifiers
source 1..2209
/db_xref="H-InvDB:HIT000035675"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20164 IMAGE:4652523"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2209
/gene="SLC9A1"
/db_xref="GeneID:6548"
/db_xref="HGNC:HGNC:11071"
/db_xref="MIM:107310"
CDS 265..1932
/gene="SLC9A1"
/codon_start=1
/product="SLC9A1 protein"
/protein_id="AAH12121.1"
/db_xref="GeneID:6548"
/db_xref="HGNC:HGNC:11071"
/db_xref="MIM:107310"
/translation="MVLRSGICGLSPHRIFPSLLVVVALVGLLPVLRSHGLQLSPTAS
TIRSSEPPRERSIGDVTTAPPEVTPESRPVNHSVTDHGMKPRKAFPVLGIDYTHVRTP
FEISLWILLACLMKIGFHVIPTISSIVPESCLLIVVGLLVGGLIKGVGETPPFLQSDV
FFLFLLPPIILDAGYFLPLRQFTENLGTILIFAVVGTLWNAFFLGGLMYAVCLVGGEQ
INNIGLLDNLLFGSIISAVDPVAVLAVFEEIHINELLHILVFGESLLNDAVTVVLYHL
FEEFANYEHVGIVDIFLGFLSFFVVALGGVLVGVVYGVIAAFTSRFTSHIRVIEPLFV
FLYSYMAYLSAELFHLSGIMALIASGVVMRPYVEANISHKSHTTIKYFLKMWSSVSET
LIFIFLGVSTVAGSHHWNWTFVISTLLFCLIARVLGVLGLTWFINKFRIVKLTPKDQF
IIAYGGLRGAIAFSLGYLLDKKHFPMCDLFLTAIITVIFFTVFVQVLGQGRAGPCLGD
PHRLFPWKERKACDLKCDSSPSSTTNLLCDLGRATPPFWASVSSIVK"
BASE COUNT 425 a 680 c 560 g 544 t
ORIGIN
1 caggcccgga gttccagacc ttttggtctc ctttcgtggt cgttcctggg tccttgcccc
61 ctttccccac tttggagttc cagattgcaa acccagcctc cctccacccc cagaaaattg
121 cttccatgga aatgcctctc taaaacatga acttttccta gagactacgc cagtctctct
181 tcccacttgc tgaccctttg ctacctatgt gcccggtttt actctcattt gggtaaggtc
241 gaggctggct ctggaagcag caccatggtt ctgcggtctg gcatctgtgg cctctctcca
301 catcggatct tcccttcctt actcgtggtg gttgctttgg tggggctgct gcctgttctc
361 aggagccatg gcctccagct cagcccaact gccagcacca ttcgaagctc agagccacca
421 cgagaacgct cgattgggga tgtcaccacc gctccaccgg aggtcacccc agagagccgc
481 cctgttaatc attccgtcac tgatcatggc atgaagccgc gcaaggcctt tccagtcctg
541 ggcatcgact acacacacgt gcgcaccccc ttcgagatct ccctctggat ccttctggcc
601 tgcctcatga agataggttt ccatgtgatc cccactatct caagcatcgt cccggagagc
661 tgcctgctga tcgtggtggg gctgctggtg gggggcctga tcaagggtgt aggcgagaca
721 ccccccttcc tgcagtccga cgtcttcttc ctcttcctgc tgccgcccat catcctggat
781 gcgggctact tcctgccact gcggcagttc acagaaaacc tgggcaccat cctgatcttt
841 gccgtggtgg gcacgctgtg gaacgccttc ttcctgggcg gcctcatgta cgccgtgtgc
901 ctggtgggcg gtgagcagat caacaacatc ggcctcctgg acaacctgct cttcggcagc
961 atcatctcgg ccgtggaccc cgtggcggtt ctggctgtct ttgaggaaat tcacatcaat
1021 gagctgctgc acatccttgt ttttggggag tccttgctca atgacgccgt cactgtggtc
1081 ctgtatcacc tctttgagga gtttgccaac tacgaacacg tgggcatcgt ggacatcttc
1141 ctcggcttcc tgagcttctt cgtggtggcc ctgggcgggg tgcttgtggg cgtggtctac
1201 ggggtcatcg cagccttcac ctcccgattt acctcccaca tccgggtcat cgagccgctc
1261 ttcgtcttcc tctacagcta catggcctac ttgtcagccg agctcttcca cctgtcaggc
1321 atcatggcgc tcatagcctc aggagtggtg atgcgcccct atgtggaggc caacatctcc
1381 cacaagtccc acaccaccat caaatacttc ctgaagatgt ggagcagcgt cagcgagacc
1441 ctcatcttca tcttcctcgg cgtctccacg gtggccggct cccaccactg gaactggacc
1501 ttcgtcatca gcaccctgct cttctgcctc atcgcccgcg tgctgggggt gctgggcctg
1561 acctggttca tcaacaagtt ccgtatcgtg aagctgaccc ccaaggacca gttcatcatc
1621 gcctatgggg gcctgcgagg ggccatcgcc ttctctctgg gctacctcct ggacaagaag
1681 cacttcccca tgtgtgacct gttcctcact gccatcatca ctgtcatctt cttcaccgtc
1741 tttgtgcagg tgctgggcca gggcagggca ggcccttgcc ttggggaccc tcacaggctg
1801 ttcccgtgga aagagaggaa agcgtgtgat ttgaaatgcg attctagtcc cagctccacc
1861 actaacttgc tgtgtgacct tgggcgagcc actccccctt tctgggcctc agtttcttca
1921 atcgtaaagt gagaattgtg atgagtcatt gcagagtgac tgatcagaat gtaaaggaac
1981 cagaatgctg cccaacttaa tttggaactc atagagcatt aaaaaaagtg ggtactggcc
2041 gggcacggtg actcaacgcc tgtaatccca gccctttggg aggctgaggg ggtggatcac
2101 ctgaggtcag gagtttgaga ccagcctgac taacatggtg aaaccccgtc tttactaaaa
2161 atacaaaatt agtgggcatg gtggaaaaaa aaaaaaaaaa aaaaaaaaa
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