LOCUS BC012120 1563 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens nuclear factor I/C (CCAAT-binding transcription
factor), mRNA (cDNA clone MGC:20153 IMAGE:4554661), complete cds.
ACCESSION BC012120
VERSION BC012120.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1563)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1563)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: c Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 45505148.
FEATURES Location/Qualifiers
source 1..1563
/db_xref="H-InvDB:HIT000035674"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20153 IMAGE:4554661"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1563
/gene="NFIC"
/gene_synonym="CTF"
/gene_synonym="CTF5"
/gene_synonym="MGC20153"
/gene_synonym="NF-I"
/db_xref="GeneID:4782"
/db_xref="HGNC:HGNC:7786"
/db_xref="MIM:600729"
CDS 63..1349
/gene="NFIC"
/gene_synonym="CTF"
/gene_synonym="CTF5"
/gene_synonym="MGC20153"
/gene_synonym="NF-I"
/codon_start=1
/product="nuclear factor I/C (CCAAT-binding transcription
factor)"
/protein_id="AAH12120.1"
/db_xref="GeneID:4782"
/db_xref="HGNC:HGNC:7786"
/db_xref="MIM:600729"
/translation="MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKK
HEKRMSKDEERAVKDELLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAP
GCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHP
VLCVQPHHIGVAVKELDLYLAYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQE
SFVTSGVFSVTELIQVSRTPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSS
SGSKRHKSGSMEEDVDTSPGGDYYTSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSP
FNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSALHFPTTSILPQTASTYFPHT
AIRYPPHLNPQDPLKDLVSLACDPASQQPGPSWYLG"
BASE COUNT 352 a 540 c 440 g 231 t
ORIGIN
1 aatgactcag taagttcagc gcgcccgctc cggccggccc tgcgcctccc gccgcgcccg
61 ggatgtattc gtccccgctc tgcctcaccc aggatgagtt ccacccgttc atcgaggccc
121 tgctgcctca cgtccgcgcc ttcgcctaca cctggttcaa cctgcaggcg cggaagcgca
181 agtacttcaa gaagcacgag aagcggatgt cgaaggacga ggagcgtgcg gtcaaggacg
241 agctgctggg cgagaagccc gaggtcaagc agaagtgggc gtcgcggctg ctggccaagc
301 tgcgcaagga catccggccc gagtgccgcg aggacttcgt gctgagcatc accggcaaga
361 aggcgccggg ctgcgtgctc tccaaccccg accagaaggg caagatgcgg cgcatcgact
421 gtctccggca ggcggacaag gtgtggcggc tggacctggt catggtcatc ctgttcaagg
481 gcatcccgct ggagagcacc gacggcgagc gcctggtcaa ggctgcgcag tgcggtcacc
541 cggtcctgtg cgtgcagccg caccacattg gcgtggccgt caaggagctg gacctctacc
601 tggcctactt cgtgcgtgag cgagatgcag agcaaagcgg cagtccccgg acagggatgg
661 gctctgacca ggaggacagc aagcccatca cgctggacac gaccgacttc caggagagct
721 ttgtcacctc cggcgtgttc agcgtcactg agctcatcca agtgtcccgg acacccgtgg
781 tgactggaac aggacccaac ttctccctgg gggagctgca ggggcacctg gcatacgacc
841 tgaacccagc cagcactggc ctcagaagaa cgctgcccag cacctcctcc agtgggagca
901 agcggcacaa atcgggctcg atggaggaag acgtggacac gagccctggc ggcgattact
961 acacttcgcc cagctcgccc acgagtagca gccgcaactg gacggaggac atggaaggag
1021 gcatctcgtc cccggtgaag aagacagaga tggacaagtc accattcaac agcccgtccc
1081 cccaggactc tccccgcctc tccagcttca cccagcacca ccggcccgtc atcgccgtgc
1141 acagcgggat cgcccggagc ccacacccgt cctccgctct gcatttccct acgacgtcca
1201 tcctacccca gacggcctcc acctacttcc cccacacggc catccgctac ccacctcatc
1261 tcaaccccca ggacccgctc aaagatcttg tctcgctggc ctgcgaccca gccagccagc
1321 aacctggacc gtcctggtat ctgggatagc aaaggtcttc ttccctcgcc ccttctccat
1381 cgtcccagga atcccagggg gcagcacagc cggcccccgg cccacgtttt cggtggaaaa
1441 ttagagtgaa caagaacacc cctgccgact cccagcccgg ccaaaaagac aaaacacata
1501 gacgcacaca ctcaggagga aaagaaaaaa caaaggcaga agaagaaaaa aaaaaaaaaa
1561 aaa
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