LOCUS BC012117 1498 bp mRNA linear HUM 04-OCT-2003
DEFINITION Homo sapiens serologically defined colon cancer antigen 10, mRNA
(cDNA clone MGC:20141 IMAGE:4552442), complete cds.
ACCESSION BC012117
VERSION BC012117.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1498)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1498)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: b Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5031958.
FEATURES Location/Qualifiers
source 1..1498
/db_xref="H-InvDB:HIT000035672"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20141 IMAGE:4552442"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1498
/gene="SDCCAG10"
/gene_synonym="NY-CO-10"
/db_xref="GeneID:10283"
CDS 483..1358
/gene="SDCCAG10"
/gene_synonym="NY-CO-10"
/codon_start=1
/product="SDCCAG10 protein"
/protein_id="AAH12117.1"
/db_xref="GeneID:10283"
/translation="MANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRL
SEVDIDDDERPHNPHKIKSCEVLFNPFDDIIPREIKRLKKEKPEEEVKKLKPKGTKNF
SLLSFGEEAEEEEEEVNRVSQSMKGKSKSSHDLLKDDPHLSSVPVVESEKGDAPDLVD
DGEDESAEHDEYIDGDEKNLMRERIAKKLKKDTSANVKSAGEGEVEKKSVSRSEELRK
EARQLKRELLAAKQKKVENAAKQAEKRSEEEEAPPDGAVAEYRREKQKYEALRKQQSK
KGTSREDQDVTCTSV"
misc_feature 483..683
/gene="SDCCAG10"
/gene_synonym="NY-CO-10"
/note="pro_isomerase; Region: Cyclophilin type
peptidyl-prolyl cis-trans isomerase"
/db_xref="CDD:pfam00160"
BASE COUNT 549 a 240 c 378 g 331 t
ORIGIN
1 aattcggcac aaggtttggg caggggtagt gtttggtgtc cctgtcttgc gtgatattga
61 caaactgaag ctttcctgca ccactggact taaggaagag tgtactcgta ggcggacagc
121 tttagtggcc ggccggccgc tctcatcccc cgtaaggagc agagtccttt gtactgacca
181 agatgagcaa catctacatc caggagcctc ccacgaatgg gaaggtttta ttgaaaacta
241 cagctggaga tattgacata gagttgtggt ccaaagaagc tcctaaagct tgcagaaatt
301 ttatccaact ttgtttggaa gcttattatg acaataccat ttttcataga gttgtgcctg
361 gtttcatagt ccaaggcgga gatcctactg gcacagggag tggtggagag tctatctatg
421 gagcgccatt caaagatgaa tttcattcac ggttgcgttt taatcggaga ggactggttg
481 ccatggcaaa tgctggttct catgataatg gcagccagtt tttcttcaca ctgggtcgag
541 cagatgaact taacaataag cataccatct ttggaaaggt tacaggggat acagtatata
601 acatgttgcg actgtcagaa gtagacattg atgatgacga aagaccacat aatccacaca
661 aaataaaaag ctgtgaggtt ttgtttaatc cttttgatga catcattcca agggaaatta
721 aaaggctgaa aaaagagaaa ccagaggagg aagtaaagaa attgaaaccc aaaggcacaa
781 aaaattttag tttactttca tttggagagg aagctgagga agaagaggag gaagtaaatc
841 gagttagtca gagcatgaag ggcaaaagca aaagtagtca tgacttgctt aaggatgatc
901 cacatctcag ttctgttcca gttgtagaaa gtgaaaaagg tgatgcacca gatttagttg
961 atgatggaga agatgaaagt gcagagcatg atgaatatat tgatggtgat gaaaagaacc
1021 tgatgagaga aagaattgcc aaaaaattaa aaaaggacac aagtgcgaat gttaaatcag
1081 ctggagaagg agaagtggag aagaaatcag tcagccgcag tgaagagctc agaaaagaag
1141 caagacaatt aaaacgggaa ctcttagcag caaaacaaaa aaaagtagaa aatgcagcaa
1201 aacaagcaga aaaaagaagt gaagaggaag aagcccctcc agatggtgct gttgccgaat
1261 acagaagaga aaagcaaaag tatgaagctt tgaggaagca acagtcaaag aagggaactt
1321 cccgggaaga tcaggatgtc acatgtactt cagtttgagg ataaaagcag aaaagtgaaa
1381 gatgcaagca tgcaagactc agatacattt gaaatctatg atcctcggaa tccagtgaat
1441 aaaagaagga gggaagaaag caaaaagctg atgagagaga aaaaaaaaaa aaaaaaaa
//