LOCUS BC012063 1742 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens retinoid X receptor, gamma, mRNA (cDNA clone MGC:19909
IMAGE:4635470), complete cds.
ACCESSION BC012063
VERSION BC012063.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1742)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1742)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: j Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 58331205.
FEATURES Location/Qualifiers
source 1..1742
/db_xref="H-InvDB:HIT000035630"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:19909 IMAGE:4635470"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1742
/gene="RXRG"
/gene_synonym="NR2B3"
/gene_synonym="RXRC"
/db_xref="GeneID:6258"
/db_xref="HGNC:HGNC:10479"
/db_xref="MIM:180247"
CDS 189..1580
/gene="RXRG"
/gene_synonym="NR2B3"
/gene_synonym="RXRC"
/codon_start=1
/product="retinoid X receptor, gamma"
/protein_id="AAH12063.1"
/db_xref="GeneID:6258"
/db_xref="HGNC:HGNC:10479"
/db_xref="MIM:180247"
/translation="MYGNYSHFMKFPAGYGGSPGHTGSTSMSPSAALSTGKPMDSHPS
YTDTPVSAPRTLSAVGTPLNALGSPYRVITSAMGPPSGALAAPPGINLVAPPSSQLNV
VNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCK
GFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRE
RAESEAECATSGHEDMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICHAADKQ
LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVH
RSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVET
LREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDT
FLMEMLETPLQIT"
BASE COUNT 439 a 501 c 436 g 366 t
ORIGIN
1 ctccgatcta gaggcagatt cctgactaat cccagagggc tggcccagcc tgtgctcccc
61 gggctgctag gaagcgatga ccactcttgt tagcccaagt tgaagaaagc cgggctgtgc
121 ctgggagccg agagaggcgg taatatttag aagctgcaca ggagaggaac atgaactgac
181 gagtaaacat gtatggaaat tattctcact tcatgaagtt tcccgcaggc tatggaggct
241 cccctggcca cactggctct acatccatga gcccatcagc agccttgtcc acagggaagc
301 caatggacag ccaccccagc tacacagata ccccagtgag tgccccacgg actctgagtg
361 cagtggggac ccccctcaat gccctgggct ctccatatcg agtcatcacc tctgccatgg
421 gcccaccctc aggagcactt gcagcgcctc caggaatcaa cttggttgcc ccacccagct
481 ctcagctaaa tgtggtcaac agtgtcagca gttcagagga catcaagccc ttaccagggc
541 ttcccgggat tggaaacatg aactacccat ccaccagccc cggatctctg gttaaacaca
601 tctgtgccat ctgtggagac agatcctcag gaaagcacta cggggtatac agttgtgaag
661 gctgcaaagg gttcttcaag aggacgataa ggaaggacct catctacacg tgtcgggata
721 ataaagactg cctcattgac aagcgtcagc gcaaccgctg ccagtactgt cgctatcaga
781 agtgccttgt catgggcatg aagagggaag ctgtgcaaga agaaagacag aggagccgag
841 agcgagctga gagtgaggca gaatgtgcta ccagtggtca tgaagacatg cctgtggaga
901 ggattctaga agctgaactt gctgttgaac caaagacaga atcctatggt gacatgaata
961 tggagaactc gacaaatgac cctgttacca acatatgtca tgctgctgac aagcagcttt
1021 tcaccctcgt tgaatgggcc aagcgtattc cccacttctc tgacctcacc ttggaggacc
1081 aggtcatttt gcttcgggca gggtggaatg aattgctgat tgcctctttc tcccaccgct
1141 cagtttccgt gcaggatggc atccttctgg ccacgggttt acatgtccac cggagcagtg
1201 cccacagtgc tggggtcggc tccatctttg acagagtcct aactgagctg gtttccaaaa
1261 tgaaagacat gcagatggac aagtcggaac tgggatgcct gcgagccatt gtactcttta
1321 acccagatgc caagggcctg tccaacccct ctgaggtgga gactctgcga gagaaggttt
1381 atgccaccct tgaggcctac accaagcaga agtatccgga acagccaggc aggtttgcca
1441 agctgctgct gcgcctccca gctctgcgtt ccattggctt gaaatgcctg gagcacctct
1501 tcttcttcaa gctcatcggg gacaccccca ttgacacctt cctcatggag atgttggaga
1561 ccccgctgca gatcacctga gccccaccag ccacagcctc cccacccagg atgacccctg
1621 ggcaggtgtg tgtggacccc caccctgcac tttcctccac ctcccaccct gacccccttc
1681 ctgtccccaa aatgtgatgc ttataataaa gaaaaccttt ctacaaaaaa aaaaaaaaaa
1741 aa
//