LOCUS BC012048 1686 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens solute carrier family 10 (sodium/bile acid
cotransporter family), member 4, mRNA (cDNA clone MGC:12990
IMAGE:3502817), complete cds.
ACCESSION BC012048
VERSION BC012048.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1686)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1686)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: d Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34328082.
FEATURES Location/Qualifiers
source 1..1686
/db_xref="H-InvDB:HIT000087773"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12990 IMAGE:3502817"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1686
/gene="SLC10A4"
/gene_synonym="MGC29802"
/db_xref="GeneID:201780"
/db_xref="HGNC:HGNC:22980"
CDS 78..1391
/gene="SLC10A4"
/gene_synonym="MGC29802"
/codon_start=1
/product="solute carrier family 10 (sodium/bile acid
cotransporter family), member 4"
/protein_id="AAH12048.2"
/db_xref="GeneID:201780"
/db_xref="HGNC:HGNC:22980"
/translation="MDGNDNVTLLFAPLLRDNYTLAPNASSLGPGTDLALAPASSAGP
GPGLSLGPGPSFGFSPGPTPTPEPTTSGLAGGAASHGPSPFPRPWAPHALPFWDTPLN
HGLNVFVGAALCITMLGLGCTVDVNHFGAHVRRPVGALLAALCQFGLLPLLAFLLALA
FKLDEVAAVAVLLCGCCPGGNLSNLMSLLVDGDMNLSIIMTISSTLLALVLMPLCLWI
YSWAWINTPIVQLLPLGTVTLTLCSTLIPIGLGVFIRYKYSRVADYIVKVSLWSLLVT
LVVLFIMTGTMLGPELLASIPAAVYVIAIFMPLAGYASGYGLATLFHLPPNCKRTVCL
ETGSQNVQLCTAILKLAFPPQFIGSMYMFPLLYALFQSAEAGIFVLIYKMYGSEMLHK
RDPLDEDEDTDISYKKLKEEEMADTSYGTVKAENIIMMETAQTSL"
BASE COUNT 379 a 485 c 424 g 398 t
ORIGIN
1 gcggcgactg cggcgaccgc gggacggcga gaggcacgcg gcgggagggg accggaatcc
61 gcagctccgg ccgcgccatg gacggcaacg acaacgtgac cctgctcttc gcccctctgc
121 tgcgggacaa ctacaccctg gcgcccaatg ccagcagcct gggccccggc acggacctcg
181 ccctcgcccc tgcctccagc gccggccccg gccctgggct cagcctcggg ccgggtccga
241 gcttcggctt cagccccggc cccactccga ccccggagcc cacgaccagc ggcctcgcgg
301 gcggcgcggc gagccacggc ccttccccgt tccctcggcc ctgggcgccc cacgcgctcc
361 cgttctggga cacgccgctg aaccacgggc tgaacgtgtt cgtgggcgcc gccctgtgca
421 tcaccatgct gggcctgggc tgcacggtgg acgtgaacca cttcggggcg cacgtccgtc
481 ggcccgtggg cgcgctgctg gcagcgctct gccagttcgg cctcctgccg ctgctggcct
541 tcctgctggc cctcgccttc aagctggacg aggtggccgc cgtggcggtg ctcctgtgtg
601 gctgctgtcc cggcggcaat ctctccaatc ttatgtccct gctggttgac ggcgacatga
661 acctcagcat catcatgacc atctcctcca cgcttctggc cctcgtcttg atgcccctgt
721 gcctgtggat ctacagctgg gcttggatca acacccctat cgtgcagtta ctacccctag
781 ggaccgtgac cctgactctc tgcagcactc tcatacctat cgggttgggc gtcttcattc
841 gctacaaata cagccgggtg gctgactaca ttgtgaaggt ttccctgtgg tctctgctag
901 tgactctggt ggtccttttc ataatgaccg gcactatgtt aggacctgaa ctgctggcaa
961 gtatccctgc agctgtttat gtgatagcaa tttttatgcc tttggcaggc tacgcttcag
1021 gttatggttt agctactctc ttccatcttc cacccaactg caagaggact gtatgtctgg
1081 aaacaggtag tcagaatgtg cagctctgta cagccattct aaaactggcc tttccaccgc
1141 aattcatagg aagcatgtac atgtttcctt tgctgtatgc acttttccag tctgcagaag
1201 cggggatttt tgttttaatc tataaaatgt atggaagtga aatgttgcac aagcgagatc
1261 ctctagatga agatgaagat acagatattt cttataaaaa actaaaagaa gaggaaatgg
1321 cagacacttc ctatggcaca gtgaaagcag aaaatataat aatgatggaa accgctcaga
1381 cttctctcta aatgtggaga tacacaggag cttctatctt gctgaaatat tgcttcatat
1441 ttatagcctg tggtagtgca catggttaac ataaaagata acactggttc acatcataca
1501 tgtaacaatt ctgatctttt taaggttcac tggtgtatta accaaacgtt gtcacaaatt
1561 acaaatcaat gctgtaatat aatttgcacc tggaatggct aacgtgaagc ctgaattaaa
1621 tgtggttttt agtttttacc atcaccaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1681 aaaaaa
//