LOCUS BC011979 1765 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens poly-U binding splicing factor 60KDa, mRNA (cDNA clone
MGC:9835 IMAGE:3863660), complete cds.
ACCESSION BC011979
VERSION BC011979.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1765)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1765)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: i Column: 11.
FEATURES Location/Qualifiers
source 1..1765
/db_xref="H-InvDB:HIT000035580"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9835 IMAGE:3863660"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_66"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1765
/gene="PUF60"
/gene_synonym="FIR"
/gene_synonym="RoBPI"
/gene_synonym="SIAHBP1"
/db_xref="GeneID:22827"
/db_xref="HGNC:HGNC:17042"
/db_xref="MIM:604819"
CDS 28..1578
/gene="PUF60"
/gene_synonym="FIR"
/gene_synonym="RoBPI"
/gene_synonym="SIAHBP1"
/codon_start=1
/product="PUF60 protein"
/protein_id="AAH11979.1"
/db_xref="GeneID:22827"
/db_xref="HGNC:HGNC:17042"
/db_xref="MIM:604819"
/translation="MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQT
IAHQQQQLTNLQMAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTI
RQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG
RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP
TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLP
PAAAVAAAAATAKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAP
GVITGVTPARPPIPVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLS
EQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAV
NRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER
FDNSDLSA"
BASE COUNT 413 a 514 c 521 g 317 t
ORIGIN
1 atagctctcg gcacagactc catcaagatg gagaacgggc agagcacagc cgccaagctg
61 gggctgcctc ccctgacgcc cgagcagcag gaggcccttc agaaggccaa gaagtacgcc
121 atggagcaga gcatcaagag tgtgctggtg aagcagacca tcgcgcacca gcagcagcag
181 ctcaccaacc tgcagatggc agcagtgaca atgggctttg gagatcctct ctcacctttg
241 caatcgatgg cggctcagcg gcagcgggcg ctggccatca tgtgccgcgt ctacgtgggc
301 tctatctact atgagctggg ggaggacacc atccgccagg cctttgcccc ctttggcccc
361 atcaagagca tcgacatgtc ctgggactcc gtcaccatga agcacaaggg ctttgccttc
421 gtggagtatg aggtccccga agctgcacag ctggccttgg agcagatgaa ctcggtgatg
481 ctggggggca ggaacatcaa ggtgggcaga cccagcaaca tagggcaggc ccagcccatc
541 atagaccagt tggctgagga ggcacgggcc ttcaaccgca tctacgtggc ctctgtgcac
601 caggacctct cagacgatga catcaagagc gtgtttgagg cctttggcaa gatcaagtcc
661 tgcacactgg cccgggaccc cacaactggc aagcacaagg gctacggctt cattgagtac
721 gagaaggccc agtcgtccca agatgctgtg tcttccatga acctctttga cctgggtggc
781 cagtacttgc gggtgggcaa ggctgtcaca ccgcccatgc ccctactcac accagccacg
841 cctggaggcc tcccacctgc cgctgctgtg gcagctgctg cagccactgc caagatcaca
901 gctcaggaag cagtggccgg agcagcggtg ctgggtaccc tgggcacacc tggactggtg
961 tccccagcac tgaccctggc ccagcccctg ggcactttgc cccaggctgt catggctgcc
1021 caggcacctg gagtcatcac aggtgtgacc ccagcccgtc ctcctatccc ggtcaccatc
1081 ccctcggtgg gagtggtgaa ccccatcctg gccagccctc caacgctggg tctcctggag
1141 cccaagaagg agaaggaaga agaggagctg tttcccgagt cagagcggcc agagatgctg
1201 agcgagcagg agcacatgag catctcgggc agtagcgccc gacacatggt gatgcagaag
1261 ctgctccgca agcaggagtc tacagtgatg gttctgcgca acatggtgga ccccaaggac
1321 atcgatgatg acctggaagg ggaggtgaca gaggagtgtg gcaagttcgg ggccgtgaac
1381 cgcgtcatca tctaccaaga gaaacaaggc gaggaggagg atgcagaaat cattgtcaag
1441 atctttgtgg agttttccat agcctctgag actcataagg ccatccaggc cctcaatggc
1501 cgctggtttg ctggccgcaa ggtggtggct gaagtgtacg accaggagcg ttttgataac
1561 agtgacctct ctgcgtgaca gtggtccctc tccccggact tgcacttgtt ccttgtttcc
1621 tctgggtttt atagtgatac agtggtgtcc ccggggccag gcgcgctctg cccagcccag
1681 cctacagtgc ggataaaggt gcggatgctg ctggccctga aaaaaaaaaa aaaaaaaaaa
1741 aaaaaaaaaa aaaaaaaaaa aaaaa
//