LOCUS BC011976 1113 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chemokine (C-X-C motif) ligand 1 (melanoma growth
stimulating activity, alpha), mRNA (cDNA clone MGC:9049
IMAGE:3856841), complete cds.
ACCESSION BC011976
VERSION BC011976.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1113)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1113)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: a Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4504152.
FEATURES Location/Qualifiers
source 1..1113
/db_xref="H-InvDB:HIT000035578"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9049 IMAGE:3856841"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_66"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1113
/gene="CXCL1"
/gene_synonym="GROa"
/gene_synonym="MGSA alpha"
/gene_synonym="MGSA-a"
/gene_synonym="NAP-3"
/gene_synonym="SCYB1"
/db_xref="GeneID:2919"
/db_xref="HGNC:HGNC:4602"
/db_xref="MIM:155730"
CDS 68..391
/gene="CXCL1"
/gene_synonym="GROa"
/gene_synonym="MGSA alpha"
/gene_synonym="MGSA-a"
/gene_synonym="NAP-3"
/gene_synonym="SCYB1"
/codon_start=1
/product="chemokine (C-X-C motif) ligand 1 (melanoma
growth stimulating activity, alpha)"
/protein_id="AAH11976.1"
/db_xref="GeneID:2919"
/db_xref="HGNC:HGNC:4602"
/db_xref="MIM:155730"
/translation="MARAALSAAPSNPRLLRVALLLLLLVAAGRRAAGASVATELRCQ
CLQTLQGIHPKNIQSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLN
SDKSN"
BASE COUNT 309 a 256 c 245 g 303 t
ORIGIN
1 gccgcaggca cctcctcgcc agctcttccg ctcctctcac agccgccaga cccgcctgct
61 gagccccatg gcccgcgctg ctctctccgc cgcccccagc aatccccggc tcctgcgagt
121 ggcactgctg ctcctgctcc tggtagccgc tggccggcgc gcagcaggag cgtccgtggc
181 cactgaactg cgctgccagt gcttgcagac cctgcaggga attcacccca agaacatcca
241 aagtgtgaac gtgaagtccc ccggacccca ctgcgcccaa accgaagtca tagccacact
301 caagaatggg cggaaagctt gcctcaatcc tgcatccccc atagttaaga aaatcatcga
361 aaagatgctg aacagtgaca aatccaactg accagaaggg aggaggaagc tcactggtgg
421 ctgttcctga aggaggccct gcccttatag gaacagaaga ggaaagagag acacagctgc
481 agaggccacc tggattgtgc ctaatgtgtt tgagcatcgc ttaggagaag tcttctattt
541 atttatttat tcattagttt tgaagattct atgttaatat tttaggtgta aaataattaa
601 gggtatgatt aactctacct gcacactgtc ctattatatt cattcttttt gaaatgtcaa
661 ccccaagtta gttcaatctg gattcatatt taatttgaag gtagaatgtt ttcaaatgtt
721 ctccagtcat tatgttaata tttctgagga gcctgcaaca tgccagccac tgtgatagag
781 gctggcggat ccaagcaaat ggccaatgag atcattgtga aggcagggga atgtatgtgc
841 acatctgttt tgtaactgtt tagatgaatg tcagttgtta tttattgaaa tgatttcaca
901 gtgtgtggtc aacatttctc atgttgaaac tttaagaact aaaatgttct aaatatccct
961 tggacatttt atgtctttct tgtaaggcat actgccttgt ttaatggtag ttttacagtg
1021 tttctggctt agaacaaagg ggcttaatta ttgatgtttt catagagaat ataaaaataa
1081 agcccttata gaaaaaaaaa aaaaaaaaaa aaa
//