LOCUS BC011927 2560 bp mRNA linear HUM 23-DEC-2003 DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, mRNA (cDNA clone IMAGE:4544412), partial cds. ACCESSION BC011927 VERSION BC011927.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2560) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2560) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Dec 19, 2003 this sequence version replaced BC011927.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 28 Row: o Column: 16 This clone was selected for full length sequencing because it passed the following selection criteria: Similarity but not identity to protein. FEATURES Location/Qualifiers source 1..2560 /db_xref="H-InvDB:HIT000035546" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4544412" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_20" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..2560 /gene="DDX27" /gene_synonym="dJ686N3.1" /gene_synonym="DKFZp667N057" /gene_synonym="FLJ12917" /gene_synonym="FLJ20596" /gene_synonym="FLJ22238" /gene_synonym="HSPC259" /gene_synonym="MGC1018" /gene_synonym="PP3241" /gene_synonym="RHLP" /gene_synonym="Rrp3p" /db_xref="GeneID:55661" CDS <1..2306 /gene="DDX27" /gene_synonym="dJ686N3.1" /gene_synonym="DKFZp667N057" /gene_synonym="FLJ12917" /gene_synonym="FLJ20596" /gene_synonym="FLJ22238" /gene_synonym="HSPC259" /gene_synonym="MGC1018" /gene_synonym="PP3241" /gene_synonym="RHLP" /gene_synonym="Rrp3p" /codon_start=3 /product="DDX27 protein" /protein_id="AAH11927.2" /db_xref="GeneID:55661" /translation="DNMLADLGLIGTIGEDDEVPVEPESDSGDEEEEGPIVLGRRQKA LGKNRSADFNPDFVFTEKEGTYDGSWALADVMSQLKKKRAATTLDEKIEKVRKKRKTE DKEAKSGKLEKEKEAKEGSEPKEQEDLQENDEEGSEDEASETDYSSADENILTKADTL KVKDRKKKKKKGQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKA CIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQV HSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLS SIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPV RIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRM HILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVIN FTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDV ILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWF QTKEERKKEKIAKALQEFDLALRGKKKRKKFMKDAKKKGEMTAEERSQFEILKAQMFA ERLAKRNRRAKRARAMPEEEPVRGPAKKQKQGKKSVFDEELTNTSKKALKQYRASPSF EERKQLGLPHQRRGGNFKSKSRYKRRK" misc_feature 573..1187 /gene="DDX27" /gene_synonym="dJ686N3.1" /gene_synonym="DKFZp667N057" /gene_synonym="FLJ12917" /gene_synonym="FLJ20596" /gene_synonym="FLJ22238" /gene_synonym="HSPC259" /gene_synonym="MGC1018" /gene_synonym="PP3241" /gene_synonym="RHLP" /gene_synonym="Rrp3p" /note="DEADc; Region: DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region" /db_xref="CDD:cd00268" misc_feature 1230..1562 /gene="DDX27" /gene_synonym="dJ686N3.1" /gene_synonym="DKFZp667N057" /gene_synonym="FLJ12917" /gene_synonym="FLJ20596" /gene_synonym="FLJ22238" /gene_synonym="HSPC259" /gene_synonym="MGC1018" /gene_synonym="PP3241" /gene_synonym="RHLP" /gene_synonym="Rrp3p" /note="HELICc; Region: Helicase superfamily c-terminal domain" /db_xref="CDD:cd00079" BASE COUNT 748 a 591 c 726 g 495 t ORIGIN 1 gcgacaacat gcttgcggac ctcggcttaa tcggaaccat aggcgaggat gacgaggtgc 61 cggtggagcc cgagtctgac tccggggacg aggaagagga ggggcccatt gtgctgggca 121 gacgacaaaa agctttgggg aagaaccgca gtgctgattt caaccctgat ttcgttttca 181 ctgagaagga ggggacgtac gatggcagct gggccctggc tgatgtcatg agccaactca 241 agaagaagag ggcagccact acattagatg agaagattga gaaagttcga aagaaaagga 301 aaacagagga taaagaagcc aagtctggga agttggaaaa ggagaaagaa gcaaaggaag 361 gctctgaacc aaaggagcag gaagaccttc aagagaatga tgaggaaggc tcagaagatg 421 aagcctcgga gactgactac tcatcagctg atgagaacat cctcaccaaa gcagatacac 481 tcaaagtaaa ggatcggaag aagaagaaga agaaaggaca ggaagcagga ggattttttg 541 aagatgcatc tcagtacgat gaaaacctct cgttccagga catgaacctt tcccgccctc 601 ttctgaaggc cattacagcc atgggcttca agcagcccac cccgatccag aaggcgtgca 661 tacctgtggg tctattgggg aaggacatct gtgcctgtgc agccactggg acaggtaaaa 721 ctgccgcctt tgccctgcct gttttggagc gtctgattta taaaccccgc caggctccag 781 tcacccgcgt gctggtgcta gtgcccaccc gagagctggg catccaggtg cactctgtca 841 ccagacagct ggcccagttc tgcaacatca ccacctgcct ggctgtgggc ggcttggatg 901 tgaagtctca ggaagcagct cttcgggcag cgcctgacat cctcatcgcc accccaggcc 961 ggctcatcga tcacctccac aactgccctt ccttccacct gagcagcatc gaggtgctca 1021 tcctggacga ggctgacagg atgctggatg agtactttga ggagcagatg aaggagatca 1081 tccgaatgtg ttcccaccac cgccagacca tgctcttctc ggccaccatg acagacgagg 1141 tgaaagatct ggcttctgtc tccttgaaga atcctgtccg gatatttgtg aacagcaaca 1201 cagatgtggc tccctttctg cggcaggagt tcatccggat ccggcctaat cgtgaaggag 1261 accgggaagc catcgtggca gctttgttga cgaggacctt cactgaccat gtgatgctgt 1321 tcacgcaaac caagaagcag gcccaccgca tgcacatcct cctggggctc atggggctgc 1381 aggtgggtga gctccatggc aacttgtcac agacgcagcg gctggaggcc ctccggcgtt 1441 ttaaggatga acagattgac atcctcgtgg ccactgatgt ggcagcccgt ggacttgaca 1501 ttgagggggt caaaacggta atcaacttca caatgcctaa taccatcaaa cattatgtcc 1561 accgggtggg gcgaacagca cgtgctggca gggctgggcg ctcagtctct ctggtgggag 1621 aagatgagcg gaagatgctg aaggagattg taaaagctgc caaggcccct gtgaaggcca 1681 ggatacttcc ccaagatgtc atcctcaaat tccgggacaa gattgagaaa atggagaaag 1741 atgtgtatgc agttctgcag ctagaggcgg aggaaaaaga gatgcagcag tcagaagccc 1801 agatcaatac agcaaagcgg ctcctggaga aggggaagga ggcagtggtc caagagcccg 1861 agaggagctg gttccagacc aaagaagaga ggaagaagga gaaaattgcc aaagctctgc 1921 aggaatttga cttggcctta agaggaaaga agaaaaggaa gaagtttatg aaggatgcca 1981 aaaaaaaggg ggagatgaca gcagaggaaa ggtctcagtt tgaaatcctc aaggcgcaga 2041 tgtttgctga acggctagcg aagaggaatc gcagagccaa gcgggcccga gcaatgcccg 2101 aggaggagcc agtgagaggt cctgccaaga agcaaaagca ggggaagaaa tctgtatttg 2161 atgaagaact caccaacaca agcaagaagg ccctgaaaca gtatcgagct agcccttcct 2221 ttgaagaaag gaaacagttg ggcttgcccc accagagacg aggaggaaac tttaaatcta 2281 aatccagata caagaggagg aagtagctgt cgtggcctga agaaattcat gggggcagcc 2341 cttaaatccc ttccctgtgg gaagtcatcc tggctggtct gtcttttctc catttgttta 2401 aaaaaaaaac aaaaacaaaa aacaacactt tggtgtggtg gtatggtacg tagctatttt 2461 cctaagcatg tctgtcaatc tcccttcttg ctgattagct ttcatatgac tatattaaat 2521 ggaagtattt ttgggaaaag aaaaaaaaaa aaaaaaaaaa //