LOCUS BC011903 1579 bp mRNA linear HUM 04-OCT-2003
DEFINITION Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:20290
IMAGE:4120579), complete cds.
ACCESSION BC011903
VERSION BC011903.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1579)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1579)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC011903.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 28 Row: i Column: 18.
FEATURES Location/Qualifiers
source 1..1579
/db_xref="H-InvDB:HIT000035529"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20290 IMAGE:4120579"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1579
/gene="CAPNS1"
/gene_synonym="30K"
/gene_synonym="CANP"
/gene_synonym="CANPS"
/gene_synonym="CAPN4"
/gene_synonym="CDPS"
/db_xref="GeneID:826"
/db_xref="MIM:114170"
CDS 66..1034
/gene="CAPNS1"
/gene_synonym="30K"
/gene_synonym="CANP"
/gene_synonym="CANPS"
/gene_synonym="CAPN4"
/gene_synonym="CDPS"
/codon_start=1
/product="CAPNS1 protein"
/protein_id="AAH11903.1"
/db_xref="GeneID:826"
/db_xref="MIM:114170"
/translation="MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGG
GGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFR
RLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLG
FEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYS
DESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEVRTPILGYGCLGGPHP
SALHTSSELQSPSSYFASRPWVRAKGLVLLGFPVLTLHPPLPSGCS"
misc_feature 576..836
/gene="CAPNS1"
/gene_synonym="30K"
/gene_synonym="CANP"
/gene_synonym="CANPS"
/gene_synonym="CAPN4"
/gene_synonym="CDPS"
/note="FRQ1; Region: COG5126, FRQ1, Ca2+-binding protein
(EF-Hand superfamily) [Signal transduction mechanisms /
Cytoskeleton / Cell division and chromosome partitioning /
General function prediction only]"
/db_xref="CDD:COG5126"
BASE COUNT 328 a 487 c 445 g 319 t
ORIGIN
1 cccgggagcg gcagtggaac cgactcccag aactccggac gtgtgcggcg cagtgagtcg
61 cagccatgtt cctggttaac tcgttcttga agggcggcgg cggcggcggc gggggaggcg
121 ggggcctggg tgggggcctg ggaaatgtgc ttggaggcct gatcagcggg gccgggggcg
181 gcggcggcgg cggcggcggc ggcggcggtg gtggaggcgg cggtggcggt ggaacggcca
241 tgcgcatcct aggcggagtc atcagcgcca tcagcgaggc ggctgcgcag tacaacccgg
301 agcccccgcc cccacgcaca cattactcca acattgaggc caacgagagt gaggaggtcc
361 ggcagttccg gagactcttt gcccagctgg ctggagatga catggaggtc agcgccacag
421 aactcatgaa cattctcaat aaggttgtga cacgacaccc tgatctgaag actgatggtt
481 ttggcattga cacatgtcgc agcatggtgg ccgtgatgga tagcgacacc acaggcaagc
541 tgggctttga ggaattcaag tacttgtgga acaacatcaa aaggtggcag gccatataca
601 aacagttcga cactgaccga tcagggacca tttgcagtag tgaactccca ggtgcctttg
661 aggcagcagg gttccacctg aatgagcatc tctataacat gatcatccga cgctactcag
721 atgaaagtgg gaacatggat tttgacaact tcatcagctg cttggtcagg ctggacgcca
781 tgttccgtgc cttcaaatct cttgacaaag atggcactgg acaaatccag gtgaacatcc
841 aggaggtaag gacccccata ttggggtatg ggtgcctggg aggaccccac ccctcagccc
901 ttcataccag ctctgagctg cagtcccctt cctcctattt tgccagccgt ccctgggtga
961 gggcaaaggg gctggtgctc ttggggttcc ctgtcctcac tctccaccct cctctcccca
1021 gtggctgcag ctgactatgt attcctgaac tggagcccca gacccgcccc ctcaccgcct
1081 tgctatagga gtcacctgga gcctcggtct ctcccagggc cgatcctgtc tgcagtcaca
1141 tctttgtggg gcctgctgac ccacaagctt ttgttctctc agtacttgtt acccagcttc
1201 tcaacatcca gggcccaatt tgccctgcct ggagttcccc ctggctctag gacactctaa
1261 caagctctgt ccacgggtct ccccattccc accaggccct gcacacaccc actccgtaac
1321 ctctcccctg tacctgtgcc aagcctagca cttgtgatgc ctccatgccc cgagggccct
1381 ctctcagttc tgggaggatg actccagtcc ctgcacgccc tggcacaccc ttcacggttg
1441 ctacccaggc ggccaagctc cagaccgtgc cagacccagg tgccccagtg cctttgtcta
1501 tattctgctc ccagcctgcc aggcccagga ggaaataaac atgccccagt tgctgatcaa
1561 aaaaaaaaaa aaaaaaaaa
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