LOCUS BC011868 1511 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens small nuclear RNA activating complex, polypeptide 2,
45kDa, mRNA (cDNA clone MGC:20078 IMAGE:4545178), complete cds.
ACCESSION BC011868
VERSION BC011868.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1511)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1511)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC011868.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 28 Row: o Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4507102.
FEATURES Location/Qualifiers
source 1..1511
/db_xref="H-InvDB:HIT000035503"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20078 IMAGE:4545178"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1511
/gene="SNAPC2"
/gene_synonym="PTFdelta"
/gene_synonym="SNAP45"
/db_xref="GeneID:6618"
/db_xref="HGNC:HGNC:11135"
/db_xref="MIM:605076"
CDS 14..1018
/gene="SNAPC2"
/gene_synonym="PTFdelta"
/gene_synonym="SNAP45"
/codon_start=1
/product="small nuclear RNA activating complex,
polypeptide 2, 45kDa"
/protein_id="AAH11868.1"
/db_xref="GeneID:6618"
/db_xref="HGNC:HGNC:11135"
/db_xref="MIM:605076"
/translation="MKPPPRRRAAPARYLGEVTGPATWSAREKRQLVRLLQARQGQPE
PDATELARELRGRSEAEIRVFLQQLKGRVAREAIQKVHPGGLQGPRRREAQPPAPIEV
WTDLAEKITGPLEEALAVAFSQVLTIAATEPVTLLHSKPPKPTQARGKPLLLSAPGGQ
EDPAPEIPSSAPAAPSSAPRTPDPAPEKPSESSAGPSTEEDFAVDFEKIYKYLSSVSR
SGRSPELSAAESAVVLDLLMSLPEELPLLPCTALVEHMTETYLRLTAPQPIPAGGSLG
PAAEGDGAGSKAPEETPPATEKAEHSELKSPWQAAGICPLNPFLVPLELLGRAATPAR
"
BASE COUNT 282 a 514 c 452 g 263 t
ORIGIN
1 ctttctgagc ggcatgaagc cacctcccag gcggcgagcg gccccggcgc gctatctggg
61 cgaggtgacc ggtcccgcga cctggagcgc tcgcgagaag cggcagctag tgcgactcct
121 gcaggcgcgg cagggccagc cggagccgga cgccaccgag ctggcccggg agctgcgggg
181 ccggagcgag gctgagatcc gggtcttcct ccagcagctc aagggccgcg tagcccggga
241 ggccattcag aaagtgcatc cgggtggcct tcagggacca aggcgccggg aggcacagcc
301 cccagccccc atagaggtct ggacggatct ggctgagaag ataacagggc cactggaaga
361 agccctggca gtggctttct cgcaggtgct caccatcgcg gccacggaac cggtcaccct
421 cctgcactcc aagcccccca agcccacgca ggcccgtgga aagcctttgc tcctgagcgc
481 ccctggagga caggaagacc ccgcccctga aatacctagc tctgcccctg ctgcacctag
541 ctccgcaccc aggactcctg accctgcccc tgagaaacct tctgagtcgt cggctggtcc
601 ctccactgaa gaagactttg ctgtggactt tgagaagatc tacaagtact tgtcctctgt
661 ctcccgaagt ggccgcagcc ccgagctctc agcagctgag tccgctgtgg tcctcgacct
721 gctcatgtca cttccagagg agctgccact cctgccctgc acagccctgg ttgagcatat
781 gacggagacg tacctacgcc tgacagcccc ccagcccatt cccgctggag ggagcctggg
841 gcctgcagca gaaggggatg gggctggctc caaggcacca gaggagaccc ccccagccac
901 cgagaaggcc gagcacagcg aactgaaatc gccttggcaa gcagctggga tctgtcccct
961 gaacccgttc ctggtgcccc tggagcttct gggtcgggca gccacccctg ccaggtgagg
1021 ggcatggcgg gcaggaggcc acaccaggcc ccccgccctg cccctcggtt ctgctcggct
1081 ggccctggct ctttctgagg atcccgtcat gggggaaggt ccttgagatg atgctcagct
1141 gtggggcggg cctctaagat gccccatacg ttgggggtct cagaaatgga acccccgttg
1201 tacaggggtt gggtgggggt tgcaggactc cactcacaag cctcctgatg tcaaggacag
1261 gcggacaggg ctggcctccc ccagtcccca agccccactg tgccttgttg tctgctgggg
1321 ggccatagct ggcactgccc accgtaaagg ccctcgcaca ttttccccct tcctgtacac
1381 ctcggggcca gcatcctcac cttcttcaac tgaccagtcg tggttactcc ctgctgccag
1441 gtccttcccc ttcccggggg tattctgtga ccatgaataa agttatcatt ctcaaaaaaa
1501 aaaaaaaaaa a
//