LOCUS BC011832 2729 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens Pentatricopeptide repeat domain 3, mRNA (cDNA clone
MGC:19979 IMAGE:3939273), complete cds.
ACCESSION BC011832
VERSION BC011832.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2729)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2729)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC011832.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 28 Row: g Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38683854.
FEATURES Location/Qualifiers
source 1..2729
/db_xref="H-InvDB:HIT000035479"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:19979 IMAGE:3939273"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2729
/gene="PTCD3"
/gene_synonym="FLJ20758"
/db_xref="GeneID:55037"
/db_xref="HGNC:HGNC:24717"
CDS 2..2071
/gene="PTCD3"
/gene_synonym="FLJ20758"
/codon_start=1
/product="Pentatricopeptide repeat domain 3"
/protein_id="AAH11832.3"
/db_xref="GeneID:55037"
/db_xref="HGNC:HGNC:24717"
/translation="MAVVSAVRWLGLRSRLGQPLTGRRAGLCEQARSCRFYSGSATLS
KVEGTDVTGIEEVVIPKKKTWDKVAVLQALASTVNRDTTAVPYVFQDDPYLMPASSLE
SRSFLLAKKSGENVAKFIINSYPKYFQKDIAEPHIPCLMPEYFEPQIKDISEAALKER
IELRKVKASVDMFDQLLQAGTTVSLETTNSLLDLLCYYGDQEPSTDYHFQQTGQSEAL
EEENDETSRRKAGHQFGVTWRAKNNAERIFSLMPEKNEHSYCTMIRGMVKHRAYEQAL
NLYTELLNNRLHADVYTFNALIEATVCAINEKFEEKWSKILELLRHMVAQKVKPNLQT
FNTILKCLRRFHVFARSPALQVLREMKAIGIEPSLATYHHIIRLFDQPGDPLKRSSFI
IYDIMNELMGKRFSPKDPDDDKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGP
DQHRNFYYSKFFDLICLMEQIDVTLKWYEDLIPSAYFPHSQTMIHLLQALDVANRLEV
IPKIWKDSKEYGHTFRSDLREEILMLMARDKHPPELQVAFADCAADIKSAYESQPIRQ
TAQDWPATSLNCIAILFLRAGRTQEAWKMLGLFRKHNKIPRSELLNELMDSAKVSNSP
SQAIEVVELASAFSLPICEGLTQRVMSDFAINQEQKEALSNLTALTSDSDTDSSSDSD
SDTSEGK"
BASE COUNT 835 a 549 c 608 g 737 t
ORIGIN
1 gatggcggtt gtatctgctg ttcgctggct gggcctccgc agcaggcttg gccagccgct
61 gacgggtcgg cgggcgggtt tgtgtgaaca ggcacgcagc tgcagatttt attctggtag
121 tgcaaccctc tcaaaggttg aaggaactga tgtaacaggg attgaagaag tagtaattcc
181 aaaaaagaaa acttgggata aagtagccgt tcttcaggca cttgcatcca cagtaaacag
241 ggataccaca gctgtgcctt atgtgtttca agatgatcct taccttatgc cagcatcatc
301 tttggaatct cgttcatttt tactggcaaa gaaatccggg gagaatgtgg ccaagtttat
361 tattaattca taccccaaat attttcagaa ggacatagct gaacctcata taccgtgttt
421 aatgcctgag tactttgaac ctcagatcaa agacataagt gaagccgccc tgaaggaacg
481 aattgagctc agaaaagtca aagcctctgt ggacatgttt gatcagcttt tgcaagcagg
541 aaccactgtg tctcttgaaa caacaaatag tctcttggat ttattgtgtt actatggtga
601 ccaggagccc tcaactgatt accattttca acaaactgga cagtcagaag cattggaaga
661 ggaaaatgat gagacatcta ggaggaaagc tggtcatcag tttggagtta catggcgagc
721 aaaaaacaac gctgagagaa tcttttctct aatgccagag aaaaatgaac attcctattg
781 cacaatgatc cgaggaatgg tgaagcaccg agcttatgag caggcattaa acttgtacac
841 tgagttacta aacaacagac tccatgctga tgtatacaca tttaatgcat tgattgaagc
901 aacagtatgt gcgataaatg agaaatttga ggaaaaatgg agtaaaatac tggagctgct
961 aagacacatg gttgcacaga aggtgaaacc aaatcttcag acttttaata ccattctgaa
1021 atgtctccga agatttcatg tgtttgcaag atcgccagcc ttacaggttt tacgtgaaat
1081 gaaagccatt ggaatagaac cctcgcttgc aacatatcac catattattc gcctgtttga
1141 tcaacctgga gaccctttaa agagatcatc cttcatcatt tatgatataa tgaatgaatt
1201 aatgggaaag agattttctc caaaggaccc ggatgatgat aagttttttc agtcagccat
1261 gagcatatgc tcatctctca gagatctaga acttgcctac caagtacatg gccttttaaa
1321 aaccggagac aactggaaat tcattggacc tgatcaacat cgtaatttct attattccaa
1381 gttcttcgat ttgatttgtc taatggaaca aattgatgtt accttgaagt ggtatgagga
1441 cctgatacct tcagcctact ttccccactc ccaaacaatg atacatcttc tccaagcatt
1501 ggatgtggcc aatcggctag aagtgattcc taaaatttgg aaagatagta aagaatatgg
1561 tcatactttc cgcagtgacc tgagagaaga gatcctgatg ctcatggcaa gggacaagca
1621 cccaccagag cttcaggtgg catttgctga ctgtgctgct gatatcaaat ctgcgtatga
1681 aagccaaccc atcagacaga ctgctcagga ttggccagcc acctctctca actgtatagc
1741 tatcctcttt ttaagggctg ggagaactca ggaagcctgg aaaatgttgg ggcttttcag
1801 gaagcataat aagattccta gaagtgagtt gctgaatgag cttatggaca gtgcaaaagt
1861 gtctaacagc ccttcccagg ccattgaagt agtagagctg gcaagtgcct tcagcttacc
1921 tatttgtgag ggcctcaccc agagagtaat gagtgatttt gcaatcaacc aggaacaaaa
1981 ggaagcccta agtaatctaa ctgcattgac cagtgacagt gatactgaca gcagcagtga
2041 cagcgacagt gacaccagtg aaggcaaatg aaagtggaga ttcaggagca gcaatggtct
2101 caccatagct gctggaatca cacctgagaa ctgagatata ccaatattta acattgttac
2161 aaagaagaaa agatacagat ttggtgaatt tgttactgtg aggtacagtc agtacacagc
2221 tgacttatgt agatttaagc tgctaatatg ctacttaacc atctattaat gcaccattaa
2281 aggcttagca tttaagtagc aacattgcgg ttttcagaca catggtgagg tccatggctc
2341 ttgtcatcag gataagcctg cacacctaga gtgtcggtga gctgacctca cgatgctgtc
2401 ctcgtgcgat tgccctctcc tgctgctgga cttctgcctt tgttggcctg atgtgctgct
2461 gtgatgctgg tccttcatct taggtgttca tgcagttcta acacagttgg ggttgggtca
2521 atagtttccc aatttcagga tatttcgatg tcagaaataa cgcatcttag gaatgactaa
2581 acaagataat ggcagtttag gctgcacaac tggtaaaatg actgtagata aatgttgtaa
2641 ttagtgtaca cgtttgtatt tttgttaata tagccgctgc catagttttc taacttgaac
2701 agccaaaaaa aaaaaaaaaa aaaaaaaaa
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