LOCUS BC011788 1286 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens PRP40 pre-mRNA processing factor 40 homolog A (S.
cerevisiae), mRNA (cDNA clone IMAGE:4026200), partial cds.
ACCESSION BC011788
VERSION BC011788.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1286)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1286)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC011788.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 27 Row: l Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..1286
/db_xref="H-InvDB:HIT000087705"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4026200"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>1286
/gene="PRPF40A"
/gene_synonym="FBP-11"
/gene_synonym="FBP11"
/gene_synonym="FLAF1"
/gene_synonym="HIP10"
/gene_synonym="HYPA"
/gene_synonym="NY-REN-6"
/db_xref="GeneID:55660"
/db_xref="HGNC:HGNC:16463"
CDS 52..>1286
/gene="PRPF40A"
/gene_synonym="FBP-11"
/gene_synonym="FBP11"
/gene_synonym="FLAF1"
/gene_synonym="HIP10"
/gene_synonym="HYPA"
/gene_synonym="NY-REN-6"
/codon_start=1
/product="PRPF40A protein"
/protein_id="AAH11788.1"
/db_xref="GeneID:55660"
/db_xref="HGNC:HGNC:16463"
/translation="MRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHGMMP
QMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASGAKS
MWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNS
QTKESRWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSTAPVP
TTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTVSGTVPVVPEPEV
TSIVATVVDNENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETSKQETVADFTPKK
EEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKL
SEKKQAFNAYKVQTKKKKK"
BASE COUNT 429 a 282 c 300 g 275 t
ORIGIN
1 gttggtatgt gtagcggcag tggccgccgg cggagcagtc tgagcccgac gatgaggccg
61 gggacgggag ctgagcgtgg aggcctcatg atggggcacc ctggcatgca ttatgcccca
121 atgggaatgc accctatggg tcagagagcg aatatgcctc ctgtacctca tggaatgatg
181 ccgcagatga tgccccctat gggagggcca ccaatgggac aaatgcctgg aatgatgtcg
241 tcagtaatgc ctggaatgat gatgtctcat atgtctcagg cttccatgca gcctgcctta
301 ccgccaggag taaatagtat ggatgtagca gcaggtacag catctggtgc aaaatcaatg
361 tggactgaac ataaatcacc tgatggaagg acttactact acaacactga aaccaaacag
421 tctacctggg agaaaccaga tgatcttaaa acacctgctg agcaactctt atctaaatgc
481 ccctggaagg aatacaaatc agattctgga aagccttact attataattc tcaaacaaaa
541 gaatctcgct gggccaaacc taaagaactt gaggatcttg aaggatacca gaataccatt
601 gttgctggaa gtcttattac aaaatcaaac ctgcatgcaa tgatcaaagc tgaagaaagc
661 agtaagcaag aagagtgcac cacaacatca acagccccag tccctacaac agaaattccg
721 accacaatga gcaccatggc tgctgccgaa gcagcagctg ctgttgttgc agcagcagca
781 gcggcagcag cagcagcagc tgcagccaat gctaatgctt ccacttctgc ttctaatact
841 gtcagtggaa ctgttccagt tgttcctgag cctgaagtta cttccattgt tgctactgtt
901 gtagataatg agaatacagt aactatttca actgaggaac aagcacaact tactagtacc
961 cctgctattc aggatcaaag tgtggaagta tccagtaata ctggagaaga aacatctaag
1021 caagaaactg tagctgattt tactcccaaa aaagaagagg aggagagcca accagcaaag
1081 aaaacataca cttggaatac aaaggaagag gcaaagcaag cttttaaaga attattgaaa
1141 gaaaagcggg taccatcgaa tgcttcatgg gagcaggcta tgaaaatgat tattaatgat
1201 ccacgataca gtgctttggc aaagttaagt gaaaaaaagc aagcctttaa tgcctataaa
1261 gtccagacaa aaaaaaaaaa aaaaaa
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