LOCUS BC011780 1937 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens forkhead box A2, mRNA (cDNA clone MGC:19807
IMAGE:3940139), complete cds.
ACCESSION BC011780
VERSION BC011780.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1937)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1937)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC011780.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 27 Row: j Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24497502.
FEATURES Location/Qualifiers
source 1..1937
/db_xref="H-InvDB:HIT000035448"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:19807 IMAGE:3940139"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1937
/gene="FOXA2"
/gene_synonym="MGC19807"
/gene_synonym="TCF3B"
/db_xref="GeneID:3170"
/db_xref="HGNC:HGNC:5022"
/db_xref="MIM:600288"
CDS 43..1416
/gene="FOXA2"
/gene_synonym="MGC19807"
/gene_synonym="TCF3B"
/codon_start=1
/product="forkhead box A2"
/protein_id="AAH11780.1"
/db_xref="GeneID:3170"
/db_xref="HGNC:HGNC:5022"
/db_xref="MIM:600288"
/translation="MLGAVKMEGHEPSDWSSYYAEPEGYSSVSNMNAGLGMNGMNTYM
SMSAAAMGSGSGNMSAGSMNMSSYVGAGMSPSLAGMSPGAGAMAGMGGSAGAAGVAGM
GPHLSPSLSPLGGQAAGAMGGLAPYANMNSMSPMYGQAGLSRARDPKTYRRSYTHAKP
PYSYISLITMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFL
KVPRSPDKPGKGSFWTLHPDSGNMFENGCYLRRQKRFKCEKQLALKEAAGAAGSGKKA
AAGAQASQAQLGEAAGPASETPAGTESPHSSASPCQEHKRGGLGELKGTPAAALSPPE
PAPSPGQQQQAAAHLLGPPHHPGLPPEAHLKPEHHYAFNHPFSINNLMSSEQQHHHSH
HHHQPHKMDLKAYEQVMHYPGYGSPMPGSLAMGPVTNKTGLDASPLAADTSYYQGVYS
RPIMNSS"
BASE COUNT 442 a 628 c 556 g 311 t
ORIGIN
1 gtggctgtta aattttaaac tgccatgcac tcggcttcca gtatgctggg agcggtgaag
61 atggaagggc acgagccgtc cgactggagc agctactatg cagagcccga gggctactcc
121 tccgtgagca acatgaacgc cggcctgggg atgaacggca tgaacacgta catgagcatg
181 tcggcggccg ccatgggcag cggctcgggc aacatgagcg cgggctccat gaacatgtcg
241 tcgtacgtgg gcgctggcat gagcccgtcc ctggcgggga tgtcccccgg cgcgggcgcc
301 atggcgggca tgggcggctc ggccggggcg gctggcgtgg cgggcatggg gccgcacttg
361 agtcccagcc tgagcccgct cggggggcag gcggccgggg ccatgggcgg cctggccccc
421 tacgccaaca tgaactccat gagccccatg tacgggcagg cgggcctgag ccgcgcccgc
481 gaccccaaga cctacaggcg cagctacacg cacgcaaagc cgccctactc gtacatctcg
541 ctcatcacca tggccatcca gcagagcccc aacaagatgc tgacgctgag cgagatctac
601 cagtggatca tggacctctt ccccttctac cggcagaacc agcagcgctg gcagaactcc
661 atccgccact cgctctcctt caacgactgt ttcctgaagg tgccccgctc gcccgacaag
721 cccggcaagg gctccttctg gaccctgcac cctgactcgg gcaacatgtt cgagaacggc
781 tgctacctgc gccgccagaa gcgcttcaag tgcgagaagc agctggcgct gaaggaggcc
841 gcaggcgccg ccggcagcgg caagaaggcg gccgccgggg cccaggcctc acaggctcaa
901 ctcggggagg ccgccgggcc ggcctccgag actccggcgg gcaccgagtc gcctcactcg
961 agcgcctccc cgtgccagga gcacaagcga gggggcctgg gagagctgaa ggggacgccg
1021 gctgcggcgc tgagcccccc agagccggcg ccctctcccg ggcagcagca gcaggccgcg
1081 gcccacctgc tgggcccgcc ccaccacccg ggcctgccgc ctgaggccca cctgaagccg
1141 gaacaccact acgccttcaa ccacccgttc tccatcaaca acctcatgtc ctcggagcag
1201 cagcaccacc acagccacca ccaccaccag ccccacaaaa tggacctcaa ggcctacgaa
1261 caggtgatgc actaccccgg ctacggttcc cccatgcctg gcagcttggc catgggcccg
1321 gtcacgaaca aaacgggcct ggacgcctcg cccctggccg cagatacctc ctactaccag
1381 ggggtgtact cccggcccat tatgaactcc tcttaagaag acgacggctt caggcccggc
1441 taactctggc accccggatc gaggataagt gagagagcaa gtgggggtcg agactttggg
1501 gagacggtgt tgcagagacg caagggagaa gaaatccata acacccccac cccaacaccc
1561 ccaagacagc agtcttcctt cacccgctgc agctgttccg tcccaaacag agggccacac
1621 agatacccca cgttctatat aaggaggaaa acgggaaaga atataaagtt aaaaaaaagc
1681 ctccggtttc cactactgtg tagactcctg cttcttcaag cacctgcaga ttctgatttt
1741 tttgttgttg ttgttctcct ccattgctgt tgttgcaggg aagtcttact taaaaaaaaa
1801 aaaaaacttt tgtgagtgac tcggtgtaaa accatgtagt tttaacagaa ccagagggtt
1861 gtactattgt ttaaaaacag gaaaaaaaat aatgtaaggg tctgttgtaa atgaccaaga
1921 aaaaaaaaaa aaaaaaa
//