LOCUS BC011777 1997 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens solute carrier family 9 (sodium/hydrogen exchanger),
member 3 regulator 1, mRNA (cDNA clone MGC:19770 IMAGE:3640162),
complete cds.
ACCESSION BC011777
VERSION BC011777.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1997)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1997)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 27 Row: h Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4759139.
FEATURES Location/Qualifiers
source 1..1997
/db_xref="H-InvDB:HIT000035445"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:19770 IMAGE:3640162"
/tissue_type="Pancreas, adenocarcinoma"
/clone_lib="NIH_MGC_39"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1997
/gene="SLC9A3R1"
/gene_synonym="EBP50"
/gene_synonym="NHERF"
/db_xref="GeneID:9368"
/db_xref="HGNC:HGNC:11075"
/db_xref="MIM:604990"
CDS 205..1281
/gene="SLC9A3R1"
/gene_synonym="EBP50"
/gene_synonym="NHERF"
/codon_start=1
/product="solute carrier family 9 (sodium/hydrogen
exchanger), member 3 regulator 1"
/protein_id="AAH11777.1"
/db_xref="GeneID:9368"
/db_xref="HGNC:HGNC:11075"
/db_xref="MIM:604990"
/translation="MSADAAAGAPLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEP
GSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQLQKL
GVQVREELLRAQEAPGQAEPPAAAEVQGAGNENEPREADKSHPEQRELRPRLCTMKKG
PSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSA
IRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREALAEA
ALESPRPALVRSASSDTSEELNSQDSPPKQDSTAPSSTSSSDPILDFNISLAMAKERA
HQKRSSKRAPQMDWSKKNELFSNL"
BASE COUNT 419 a 625 c 591 g 362 t
ORIGIN
1 gcacgagggg tctgtggtcc tctctcggct cctcgcggct cgcggcggcc gacggttcct
61 gggacacctg cttgcttggc ccgtccggcg gctcagggct tctctgctgc gctcccggtt
121 cgctggacgg gaagaagggc tgggccgtcc cgtcccgtcc ccatcggaac cccaagtcgc
181 gccgctgacc cgtcgcaggg cgagatgagc gcggacgcag cggccggggc gcccctgccc
241 cggctctgct gcctggagaa gggtccgaac ggctacggct tccacctgca cggggagaag
301 ggcaagttgg gccagtacat ccggctggtg gagcccggct cgccggccga gaaggcgggg
361 ctgctggcgg gggaccggct ggtggaggtg aacggcgaaa acgtggagaa ggagacccac
421 cagcaggtgg tgagccgcat ccgcgccgca ctcaacgccg tgcgcctgct ggtggtcgac
481 cccgagacgg acgagcagct gcagaagctc ggcgtccagg tccgagagga gctgctgcgc
541 gcccaggaag cgccggggca ggccgagccg ccggccgccg ccgaggtgca gggggctggc
601 aacgaaaatg agcctcgcga ggccgacaag agccacccgg agcagcgcga gcttcggcct
661 cggctctgta ccatgaagaa gggccccagt ggctatggct tcaacctgca cagcgacaag
721 tccaagccag gccagttcat ccggtcagtg gacccagact ccccggctga ggcttcaggg
781 ctccgggccc aggatcgcat tgtggaggtg aacggggtct gcatggaggg gaagcagcat
841 ggggacgtgg tgtccgccat cagggctggc ggggacgaga ccaagctgct ggtggtggac
901 agggaaactg acgagttctt caagaaatgc agagtgatcc catctcagga gcacctgaat
961 ggtcccctgc ctgtgccctt caccaatggg gagatacaga aggagaacag tcgtgaagcc
1021 ctggcagagg cagccttgga gagccccagg ccagccctgg tgagatccgc ctccagtgac
1081 accagcgagg agctgaattc ccaagacagc cccccaaaac aggactccac agcgccctcg
1141 tctacctcct cctccgaccc catcctagac ttcaacatct ccctggccat ggccaaagag
1201 agggcccacc agaaacgcag cagcaaacgg gccccgcaga tggactggag caagaaaaac
1261 gaactcttca gcaacctctg agcgccctgc tgccacccag tgactggcag ggccgagcca
1321 gcattccacc ccaccttttt ccttctcccc aattactccc ctgaatcaat gtacaaatca
1381 gcacccacat cccctttctt gacaaatgat ttttctagag aactatgttc ttccctgact
1441 ttagggaagg tgaatgtgtt cccgtcctcc cgcagtcaga aaggagactc tgcctccctc
1501 ctcctcactg agtgcctcat cctaccgggt gtccctttgc caccctgcct gggacatcgc
1561 tggaacctgc accatgccag gatcatggga ccaggcgaga gggcaccctc ccttcctccc
1621 ccatgtgata aatgggtcca gggctgatca aagaactctg actgcagaac tgccgctctc
1681 agtggacagg gcatctgtta tcctgagacc tgtggcagac acgtcttgtt ttcatttgat
1741 ttttgttaag agtgcagtat tgcagagtct agaggaattt ttgtttcctt gattaacatg
1801 attttcctgg ttgttacatc cagggcatgg cagtggcctc agccttaaac ttttgttcct
1861 actcccaccc tcagcgaact gggcagtacg gggagggttt ggctacccct gcccatccct
1921 gagccaggta ccaccattgt aaggaaacac tttcagaaat tcagctggtt cctccaaaaa
1981 aaaaaaaaaa aaaaaaa
//