LOCUS BC011759 1733 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens LIM homeobox 4, mRNA (cDNA clone MGC:19602
IMAGE:3529089), complete cds.
ACCESSION BC011759
VERSION BC011759.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1733)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1733)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC011759.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 27 Row: d Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30410786.
FEATURES Location/Qualifiers
source 1..1733
/db_xref="H-InvDB:HIT000035431"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:19602 IMAGE:3529089"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1733
/gene="LHX4"
/gene_synonym="Gsh-4"
/db_xref="GeneID:89884"
/db_xref="HGNC:HGNC:21734"
/db_xref="MIM:602146"
CDS 44..1216
/gene="LHX4"
/gene_synonym="Gsh-4"
/codon_start=1
/product="LIM homeobox 4"
/protein_id="AAH11759.1"
/db_xref="GeneID:89884"
/db_xref="HGNC:HGNC:21734"
/db_xref="MIM:602146"
/translation="MMQSATVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILK
VLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVV
RKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRP
RTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKD
AGRHRWGQFYKSVKRSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGN
VGDVTGGQLMNGSFSMDGTGQSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTV
DSNLGIIAHAGQGVSQTLRAMAGGPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF"
BASE COUNT 448 a 459 c 481 g 345 t
ORIGIN
1 gagagatctc cgtagactgc gactcgctgg ctttcgctcc gagatgatgc agagtgcgac
61 tgtccccgcg gaaggggctg tcaaggggct cccggagatg ctaggtgtgc cgatgcaaca
121 gattccccag tgcgctggct gcaaccagca catcctggac aagttcatcc tgaaggtcct
181 ggacagacac tggcacagct cctgcctcaa gtgtgcagac tgccagatgc agctggcgga
241 caggtgcttc tccagggctg ggagcgtcta ctgcaaggag gacttcttca agcgcttcgg
301 cacaaaatgc acggcctgcc agcagggtat ccccccaacc caggtggtcc gcaaggccca
361 ggactttgtc taccacctgc actgctttgc ttgcatcatc tgcaaccggc agctggccac
421 gggggacgaa ttctacctca tggaggacgg gcggctggtg tgcaaggaag actacgagac
481 agccaagcag aacgatgact cagaggctgg agctaagcgg ccccggacca ccatcacagc
541 caagcagctg gagacattaa agaatgcata caagaactcc cccaagcctg cccggcacgt
601 gagggagcag ctgtcctcag agacaggcct ggacatgagg gtcgtacagg tttggtttca
661 gaacagaagg gccaaagaga aacgcctgaa gaaggatgca gggcggcacc gctgggggca
721 gttctataag agcgtcaaga ggagccgggg cagcagcaag caggagaagg agagctctgc
781 agaggactgt ggggttagtg acagtgagct gagcttccga gaggatcaaa ttctctcaga
841 acttggccac accaatagga tttatggcaa cgtgggggac gttacaggcg gacagttaat
901 gaatgggagc ttctccatgg acgggacagg acaatcctat caggacttga gggatgggag
961 cccctatgga atcccccagt ctccatcctc catatcgtcc ctgccatccc acgctccttt
1021 gctcaatggg ctggattaca cggtggacag taatttgggc atcattgcgc atgcagggca
1081 gggagtaagc cagacgctga gagccatggc tgggggaccc acctctgaca tctccacagg
1141 aagcagtgta ggctatcccg actttccaac tagcccaggc tcttggctcg atgaaatgga
1201 tcatcctcct ttttaaactt ctctcctccc caccctacct gcccccctgg cttgagagaa
1261 tatcttcaag gatcaaaaga gacttgcctt ttaaggatcg aaagtacgcc aatgtgaatt
1321 tccattattt tcaatggaag tcctccgctg attcctagaa ggctgtgaga ccacactagg
1381 gcattgtttc cctggggaag cagtgggaga gcagactcat ctcagaacac agcacagggg
1441 gtaatggcct agagctctag ggacactggc ttgttgggtc tctcccctgc tgttctgctt
1501 aggggcttgg ctgctcagtg ctttggtagc acaaggtgac tgtgataggc ccccttggcc
1561 tttgggaact ttgctccaac tggtgtgtct cacacaatgc ctcccaaaac actgctctca
1621 ccagaactga gactcctaag gtagaggcct cacagccctt gagtaaaata aaagtgattt
1681 ctggaccatc aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
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