LOCUS BC011705 2428 bp mRNA linear HUM 22-DEC-2006
DEFINITION Homo sapiens collagen, type IX, alpha 3, mRNA (cDNA clone MGC:19594
IMAGE:3830925), complete cds.
ACCESSION BC011705
VERSION BC011705.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2428)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2428)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC011705.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 27 Row: h Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 17921994.
FEATURES Location/Qualifiers
source 1..2428
/db_xref="H-InvDB:HIT000035389"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:19594 IMAGE:3830925"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2428
/gene="COL9A3"
/gene_synonym="DJ885L7.4.1"
/gene_synonym="EDM3"
/gene_synonym="IDD"
/gene_synonym="MED"
/db_xref="GeneID:1299"
/db_xref="HGNC:HGNC:2219"
/db_xref="MIM:120270"
CDS 4..2058
/gene="COL9A3"
/gene_synonym="DJ885L7.4.1"
/gene_synonym="EDM3"
/gene_synonym="IDD"
/gene_synonym="MED"
/codon_start=1
/product="collagen, type IX, alpha 3"
/protein_id="AAH11705.1"
/db_xref="GeneID:1299"
/db_xref="HGNC:HGNC:2219"
/db_xref="MIM:120270"
/translation="MAGPRACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPG
QDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGE
RGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPG
HPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGP
AGLPGSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFR
GPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG
LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGP
QGPPGAPGVRGFQGQKGSMGDPGLPGPQGLRGDVGDRGPGGAAGPKGDQGIAGSDGLP
GDKGELGPSGLVGPKGESGSRGELGPKGTQGPNGTSGVQGVPGPPGPLGLQGVPGVPG
ITGKPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPPG
PPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAGLDGPEGDQGPQGPQ
GVPGTSKDGQDGAPGEPGPPGDPGLPGAIGAQGTPGICDTSACQGAVLGGVGEKSGSR
SS"
BASE COUNT 464 a 762 c 894 g 308 t
ORIGIN
1 gccatggccg ggccgcgcgc gtgcgccccg ctcctgctcc tgctcctgct cggggagctt
61 ctggcggccg ccggggcgca gagagtggga ctccccggcc cccccggccc cccagggccg
121 cccgggaagc ccggccagga cggcattgac ggagaagctg gtcctccagg tctgcctggg
181 cccccgggac caaagggggc cccaggaaag ccggggaaac caggagaggc tgggctgccg
241 ggactgccgg gtgtggatgg tctgactgga cgagatggac cccctggacc caagggtgcc
301 cctggggaac ggggaagtct gggacccccg gggccgcccg ggctgggggg caaaggcctc
361 cctggacccc ccggagaggc aggagtgagc ggccccccag gtgggatcgg cctccgcggc
421 cccccgggac cttctggact ccccggcctc cctggtcccc caggacctcc cggaccccct
481 ggacacccag gagtcctccc tgaaggcgct actgaccttc agtgcccaag tatctgcccg
541 ccaggtcccc cagggccccc tggaatgcca gggttcaagg gacccactgg ctacaaaggc
601 gagcaggggg aagtcggcaa ggacggcgag aagggtgacc ctggcccccc tgggcccgcc
661 ggcctcccgg gcagcgtggg gctgcagggc ccccggggat tacgaggact gccagggcca
721 ctcgggcccc ctggggaccg gggtcccatt gggttccgag ggccgcctgg gatcccagga
781 gcgcctggga aagcgggtga ccgaggcgag aggggcccag aagggttccg cggccccaag
841 ggtgacctcg gcagacctgg tcccaaggga acccccggag tggccgggcc aagcggagag
901 ccgggcatgc cgggcaagga cggccagaat ggcgtgccag gactcgatgg ccagaaggga
961 gaggctggtc gcaacggtgc tccgggagag aagggcccca acgggctgcc gggcctccct
1021 ggacgagcgg ggtccaaagg cgagaaggga gaacggggca gagctgggga gctgggtgag
1081 gccggcccct ctggagagcc aggcgtccct ggagatgctg gcatgcctgg ggagcgcggt
1141 gaggctggcc accggggctc agcgggggcc ctcggcccac aaggccctcc cggagcccct
1201 ggtgtccgag gcttccaggg ccagaagggc agcatgggag accccggcct tccaggcccc
1261 cagggcctcc gaggtgacgt gggcgaccgg ggtccgggag gtgccgcagg ccctaaggga
1321 gaccagggta ttgcaggttc cgacggtctt cctggggata aaggagaact gggtcccagc
1381 ggcctggtcg gacccaaagg agagtctggc agtcgagggg agctgggccc caaaggcacc
1441 cagggtccca acggcaccag cggtgttcag ggtgtccccg ggccccccgg tcctctgggc
1501 ctgcagggcg tcccgggtgt tcctggcatc acggggaagc cgggagttcc ggggaaggag
1561 gccagcgagc agcgcatcag ggagctgtgt ggggggatga tcagcgaaca aattgcacag
1621 ttagccgcgc acctaaggaa gcctttggca cccgggtcca ttggtcggcc cggtccagct
1681 ggcccccctg ggcccccagg acccccaggc tccattggtc accctggcgc tcgaggaccc
1741 cccggatacc gcggtcccac tggggagctg ggagaccccg ggcccagagg aaaccagggt
1801 gacagaggag acaaaggcgc ggcaggagca gggctggacg ggcctgaagg agaccagggg
1861 ccccaaggac cccaaggcgt gcccggcacc agcaaggacg gccaggacgg tgctcccggc
1921 gagcctgggc ctcccggaga tcctgggctt ccaggtgcca ttggggccca ggggacaccg
1981 gggatctgcg acacctcagc ctgccaagga gccgtgttag gaggggtcgg ggagaaatca
2041 ggctctcgaa gctcataaaa ttcaacgtga ggaagcaagt gacaaggacg cccgaagcac
2101 agtggacggt catgaaggag cgggggtgtg gcaggcgggt gacgtccagg agagggagcg
2161 cccctggctg cccctcggcc gccgactgga cgcgcgggcc ttgccagcga gcaccctcat
2221 cgggctgtcg cctgacagca tacctcaaaa ggccctagct aataaacctg taagcccagc
2281 atttgagaga aggtagggtg tgtatatata aaaggttgtg tacaactcca cgaggtgaaa
2341 aatattcagt aacttgttta catagcattt gtgtaaagac tatgatctca tcccaataaa
2401 atgatatatt aaaaaaaaaa aaaaaaaa
//