LOCUS BC011695 1514 bp mRNA linear HUM 30-JUN-2004
DEFINITION Homo sapiens chromodomain helicase DNA binding protein 8, mRNA
(cDNA clone IMAGE:3534143), partial cds.
ACCESSION BC011695
VERSION BC011695.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1514)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1514)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC011695.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 27 Row: d Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..1514
/db_xref="H-InvDB:HIT000087691"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3534143"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1514
/gene="CHD8"
/gene_synonym="HELSNF1"
/gene_synonym="KIAA1564"
/db_xref="GeneID:57680"
CDS <1..1357
/gene="CHD8"
/gene_synonym="HELSNF1"
/gene_synonym="KIAA1564"
/codon_start=2
/product="CHD8 protein"
/protein_id="AAH11695.2"
/db_xref="GeneID:57680"
/translation="PNEDGEQMTPELLLLQERQRASEWPKDRVLINRIDLVCQAVLSG
KWPSSRRSQEMVTGGILGPGNHLLDSPSLTPGEYGDSPVPTPRSSSAASMAEEEASAV
STAAAQFTKLRRGMDEKEFTVQIKDEEGLKLTFQKHKLMANGVMGDGHPLFHKKKGNR
KKLVELEVECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEFA
VDPRFLAYMEDRRKQKWQRCKKNNKAELNCLGMEPVQTANSRNGKKGHHTETVFNRVL
PGPIAPESSKKRARRMRPDLSKMMALMQGGSTGSLSLHNTFQHSSSGLQSVSSLGHSS
ATSASLPFMPFVMGGAPSSPHVDSSTMLHHHHHHPHPHHHHHHHPGLRAPGYPSSPVT
TASGTTLRLPPLQPEEDDDEDEEDDDDLSQGYDSSERDFSLIDDPMMPANSDSSEDAD
D"
BASE COUNT 432 a 358 c 403 g 321 t
ORIGIN
1 cccaaatgaa gatggagaac aaatgacccc tgagcttctg ctactgcagg aaagacaaag
61 agcctctgag tggcccaagg atcgtgtcct gataaaccgt attgacctcg tctgccaggc
121 tgtactctca gggaagtggc cttctagccg taggagccag gaaatggtaa caggaggaat
181 tttggggcca ggcaaccact tgctagacag tccctcattg actcctggag aatatggtga
241 ctctccagtc cccacaccac gaagtagtag tgcagcttcc atggcagagg aggaagcatc
301 tgcagtcagc acagcggcag cccagttcac caaacttcgc cgaggcatgg atgaaaagga
361 gtttacagtt caaatcaaag atgaggaagg attgaagtta acattccaga agcacaagtt
421 gatggcgaat ggagtaatgg gagatggaca tccactgttt cataagaaga aggggaacag
481 aaagaagcta gtagagctgg aggtggagtg catggaagag cctaatcacc ttgatgtgga
541 cctggagacc cggatccctg tcatcaataa ggtggatggt actttgctgg tgggtgagga
601 tgcccctcgc cgggctgaac tggagatgtg gttacagggt catccagagt ttgctgttga
661 tccccgattt ctagcgtata tggaggatcg cagaaaacag aagtggcaaa gatgtaaaaa
721 aaataataag gcagaattga actgtttggg aatggaacca gtacagacag ctaactctag
781 aaatgggaaa aagggtcatc acactgaaac ggtgttcaac cgggttttgc cagggcctat
841 tgcaccagag agcagcaaga agcgggcccg taggatgcga ccagaccttt ctaagatgat
901 ggccctcatg cagggtggaa gcactgggtc tctatctctg cataacacgt tccaacacag
961 cagtagtggc ctacagtctg tgtcatcttt gggtcacagc agtgccactt ctgcatcttt
1021 gccttttatg ccatttgtga tgggtggtgc accatcatcc cctcatgtag actccagcac
1081 catgcttcat caccaccacc accaccccca cccccaccat caccaccatc accatccagg
1141 cttgagagcc cctggctacc cctcttcacc agtgactacc gcctctggta ctaccttgcg
1201 gttgccacca ctgcaacctg aggaggatga cgatgaggat gaagaagatg atgatgactt
1261 atctcagggc tatgatagct cagaaaggga cttctcactc attgatgatc ctatgatgcc
1321 agctaactca gactccagtg aagatgctga tgactgaagc cccagcatgg gccccattgc
1381 ttgggcggct gctgtatttt catttactct ggcccttgga ctatggaaac gtgggagggg
1441 caggggagat gtggggaagt ccaggactcc aggaggtgaa aaggaaaaaa aaaaaaaaaa
1501 aaaaaaaaaa aaaa
//