LOCUS BC011635 1701 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens SET domain and mariner transposase fusion gene, mRNA
(cDNA clone MGC:12780 IMAGE:4080032), complete cds.
ACCESSION BC011635
VERSION BC011635.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1701)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1701)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC011635.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: a Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5730038.
FEATURES Location/Qualifiers
source 1..1701
/db_xref="H-InvDB:HIT000035343"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12780 IMAGE:4080032"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1701
/gene="SETMAR"
/db_xref="GeneID:6419"
CDS 33..1091
/gene="SETMAR"
/codon_start=1
/product="SETMAR protein"
/protein_id="AAH11635.1"
/db_xref="GeneID:6419"
/translation="MAEFKEKPEAPTEQLDVACGQENLPVGAWPPGAAPAPFQYTPDH
VVGPGADIDPTQITFPGCICVKTPCLPGTCSCLRHGENYDDNSCLRDIGSGGKYAEPV
FECNVLCRCSDHCRNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVL
GFSEVQRRIHLQTKSDSNYIIAIREHVYNGQVMETFVDPTYIGNIGRFLNHSCEPNLL
MIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSEDKERLDHGKLRKPCYC
GAKSCTAFLPFDSSLYCPVEKSNISCGNEKEPSMCGSAPSVFPSCKRLTLEVSLFSDK
QLAPPYSGRQWLASFTSA"
misc_feature 72..362
/gene="SETMAR"
/note="PreSET; Region: N-terminal to some SET domains"
/db_xref="CDD:smart00468"
misc_feature 408..797
/gene="SETMAR"
/note="SET; Region: SET (Su(var)3-9, Enhancer-of-zeste,
Trithorax) domain"
/db_xref="CDD:smart00317"
BASE COUNT 501 a 370 c 374 g 456 t
ORIGIN
1 cggaagcggc aaagacgaca cggccttgtg ggatggcgga gtttaaggag aagcctgagg
61 ccccgactga gcagctggat gtcgcgtgcg gccaggaaaa cttgccggtg ggcgcgtggc
121 ccccgggggc cgcgccggcg cccttccagt acactcctga tcatgtagtt ggacctggag
181 cagacattga tcccactcaa ataacctttc ccggatgcat ttgtgtcaaa actccctgcc
241 tccctggcac ttgctcctgt ctccgccatg gagagaacta tgatgataac tcatgcctta
301 gagatatagg atctggagga aagtatgcag agcctgtttt tgaatgcaat gtcctgtgcc
361 gatgcagtga ccactgcaga aacagagtgg tccagaaagg tctacagttc cacttccaag
421 tgttcaagac gcataaaaaa ggctggggac ttcgtacctt ggaatttata ccgaaaggaa
481 ggtttgtctg tgaatatgct ggtgaggttt taggattctc tgaagttcag agaagaattc
541 acttacaaac aaaatccgac tccaattaca ttatagccat cagggaacat gtttataatg
601 ggcaggtaat ggaaacattt gttgacccta cttatatagg aaatattgga agattcctta
661 atcattcttg tgagccaaac cttttgatga ttcctgtccg aattgactca atggtaccta
721 agttggcact ttttgcagcc aaagatattg tgccagaaga agaactctct tatgattatt
781 caggaagata tcttaatcta acagtcagtg aagacaaaga aaggctagat catgggaaac
841 taaggaaacc ttgttactgt ggtgccaaat catgtactgc tttcctgcct tttgacagtt
901 ctctgtactg ccccgtagaa aagtcgaaca tcagttgtgg aaatgagaag gaacccagca
961 tgtgtggctc agccccttct gtgttcccct cctgcaagcg attgaccctt gaggtgagtc
1021 tgttcagtga taagcagctt gcccctccct atagtggaag acagtggttg gctagcttta
1081 cctctgccta gttacataag tttaactcag gaatgtggca gagactgcaa gttgtccatc
1141 agtatccttt cccctttctg taatagaatt ctccatttaa caaaagtaca tgactaccca
1201 gaatactcac tttcctagtt agatttgtct tagtgactgt tctagttaat aggatataag
1261 caaaaatgac aagtccttaa atggagatat cctgcccttc acctcctctt tcttcctgct
1321 ggctggaatg tatacatgat gactggaact ggagcagtca tcctagaccc caggatgacc
1381 ctgggaaagg aagccattgc atagaaaaat caacaaggtt aaaaggagtc taggtgtctg
1441 gtactgtaga acatcctgtc agtcgtgatc tgacaccttt gtactttcag gtgagaaata
1501 gtctctccct tgcttaagtc actgttattg taagttttct agcactaaca tcgaacctaa
1561 taatgatcca agaaaccctt gtggctgcat acctaaaccc tgcttgccaa ccaattttaa
1621 cagtaataaa gctgactttt tgatttctgt ctgaaaaaaa aaaaaaaaaa aaaaaaaaaa
1681 aaaaaaaaaa aaaaaaaaaa a
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