LOCUS BC011563 1472 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens linker for activation of T cells, mRNA (cDNA clone
MGC:20145 IMAGE:4644259), complete cds.
ACCESSION BC011563
VERSION BC011563.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1472)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1472)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: m Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62739158.
FEATURES Location/Qualifiers
source 1..1472
/db_xref="H-InvDB:HIT000035292"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20145 IMAGE:4644259"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1472
/gene="LAT"
/gene_synonym="LAT1"
/gene_synonym="pp36"
/db_xref="GeneID:27040"
/db_xref="HGNC:HGNC:18874"
/db_xref="MIM:602354"
CDS 145..846
/gene="LAT"
/gene_synonym="LAT1"
/gene_synonym="pp36"
/codon_start=1
/product="linker for activation of T cells"
/protein_id="AAH11563.1"
/db_xref="GeneID:27040"
/db_xref="HGNC:HGNC:18874"
/db_xref="MIM:602354"
/translation="MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSL
YPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSD
GANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRD
SAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEV
EEEGAPDYENLQELN"
BASE COUNT 293 a 440 c 430 g 309 t
ORIGIN
1 gggcctccct gctcgctgcc tccccgggtc ctggatatgg aggccacggc tgccagctgg
61 caggtggctg tccccgtctt ggggggggcc agcagaccct tggggcctag gggtgcagcc
121 agcctgctcc gagctcccct gcagatggag gaggccatcc tggtcccctg cgtgctgggg
181 ctcctgctgc tgcccatcct ggccatgttg atggcactgt gtgtgcactg ccacagactg
241 ccaggctcct acgacagcac atcctcagat agtttgtatc caaggggcat ccagttcaaa
301 cggcctcaca cggttgcccc ctggccacct gcctacccac ctgtcacctc ctacccaccc
361 ctgagccagc cagacctgct ccccatccca agatccccgc agccccttgg gggctcccac
421 cggacgccat cttcccggcg ggattctgat ggtgccaaca gtgtggcgag ctacgagaac
481 gaggaaccag cctgtgagga tgcggatgag gatgaggacg actatcacaa cccaggctac
541 ctggtggtgc ttcctgacag caccccggcc actagcactg ctgccccatc agctcctgca
601 ctcagcaccc ctggcatccg agacagtgcc ttctccatgg agtccattga tgattacgtg
661 aacgttccgg agagcgggga gagcgcagaa gcgtctctgg atggcagccg ggagtatgtg
721 aatgtgtccc aggaactgca tcctggagcg gctaagactg agcctgccgc cctgagttcc
781 caggaggcag aggaagtgga ggaagagggg gctccagatt acgagaatct gcaggagctg
841 aactgagggc ctgtggaggc cgagtctgtc ctggaaccag gcttgcctgg gacggctgag
901 ctgggcagct ggaagtggct ctggggtcct cacatggcgt cctgcccttg ctccagcctg
961 acaacagcct gagaaatccc cccgtaactt attatcactt tggggttcgg cctgtgtccc
1021 ccgaacgctc tgcaccttct gacgcagcct gagaatgacc tgccctggcc ccagccctac
1081 tctgtgtaat agaataaagg cctgcgtgtg tctgtgttga gcgtgcgtct gtgtgtgcct
1141 gtgtgcgagt ctgagtcaga gatttggaga tgtctctgtg tgtttgtgtg tatctgtggg
1201 tctccatcct ccatgggggc tcagccaggt gctgtgacac cccccttctg aatgaagcct
1261 tctgacctgg gctggcactg ctgggggtga ggacacattg ccccatgaga cagtcccaga
1321 acacggcagc tgctggctgt gacaatggtt tcaccatcct tagaccaagg gatgggacct
1381 gatgacctgg gaggactctc ttagttctta ccttttgtgg ttctcaataa aacagaactt
1441 aaaaaattaa aaaaaaaaaa aaaaaaaaaa aa
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