LOCUS BC011562 1812 bp mRNA linear HUM 09-DEC-2005
DEFINITION Homo sapiens SP100 nuclear antigen, mRNA (cDNA clone MGC:20140
IMAGE:4560914), complete cds.
ACCESSION BC011562
VERSION BC011562.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1812)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1812)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: e Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19923235.
FEATURES Location/Qualifiers
source 1..1812
/db_xref="H-InvDB:HIT000035291"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20140 IMAGE:4560914"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1812
/gene="SP100"
/gene_synonym="FLJ00340"
/db_xref="GeneID:6672"
/db_xref="HGNC:HGNC:11206"
/db_xref="IMGT/GENE-DB:11206"
/db_xref="MIM:604585"
CDS 80..1522
/gene="SP100"
/gene_synonym="FLJ00340"
/codon_start=1
/product="SP100 protein"
/protein_id="AAH11562.1"
/db_xref="GeneID:6672"
/db_xref="HGNC:HGNC:11206"
/db_xref="IMGT/GENE-DB:11206"
/db_xref="MIM:604585"
/translation="MAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGV
DDRLLYDIVFKHFKRNKVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPV
QRVVYNVLSELEKTFNLPVLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEE
EREERSGLQLSLEQGTGENSFRSLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAKR
KDTTSDKDDSLGSQQTNEQCAQKAEPTESCEQIAVQVNNGDAGREMPCPLPCDEESPE
AELHNHGIQINSCSVRLVDIKKEKPFSNSKVECQAQARTHHNQASDIIVISSEDSEGS
TDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFR
ESFKKRVIGQDHDFSESSEEEAPAEASSGALRSKHGEKAPMTSRSTSTWRIPSRKRRF
SSSDFSDLSNGEELQETCSSSLRRGSGKED"
BASE COUNT 606 a 369 c 427 g 410 t
ORIGIN
1 ccacactgca cgcaggctgg gccgactgag gggctcagag gccaggctct gaggcccacg
61 cagggcctag ggtgggaaga tggcaggtgg gggcggcgac ctgagcacca ggaggctgaa
121 tgaatgtatt tcaccagtag caaatgagat gaaccatctt cctgcacaca gccacgattt
181 gcaaaggatg ttcacggaag accagggtgt agatgacagg ctgctctatg acattgtatt
241 caagcacttc aaaagaaata aggtggagat ttcaaatgca ataaaaaaga catttccatt
301 cctcgagggc ctccgtgatc gtgatctcat cacaaataaa atgtttgaag attctcaaga
361 ttcttgtaga aacctggtcc ctgtacagag agtggtgtac aatgttctta gtgaactgga
421 gaagacattt aacctgccag ttctggaagc actgttcagc gatgtcaaca tgcaggaata
481 ccccgattta attcacattt ataaaggctt tgaaaatgta atccatgaca aattgcctct
541 ccaagaaagt gaagaagaag agagggagga gaggtctggc ctccaactaa gtcttgaaca
601 aggaactggt gaaaactctt ttcgaagcct gacttggcca ccttcgggtt ccccatctca
661 tgctggtaca accccacctg aaaatggact ctcagagcac ccctgtgaaa cagaacagat
721 aaatgcaaag agaaaagata caaccagtga caaagatgat tcgctaggaa gccaacaaac
781 aaatgaacaa tgtgctcaaa aggctgagcc aacagagtcc tgcgaacaaa ttgctgtcca
841 agtgaataat ggggatgctg gaagggagat gccctgcccg ttgccctgtg atgaagaaag
901 cccagaggca gagctacaca accatggaat ccaaattaat tcctgttctg tgcgactggt
961 ggatataaaa aaggaaaagc cattttctaa ttcaaaagtt gagtgccaag cccaagcaag
1021 aactcatcat aaccaggcat ctgacataat agtcatcagc agtgaggact ctgaaggatc
1081 cactgacgtt gatgagccct tagaagtctt catctcagca ccgagaagtg agcctgtgat
1141 caataatgac aaccctttag aatcaaatga tgaaaaggag ggccaagaag ccacttgctc
1201 acgaccccag attgtaccag agcccatgga tttcagaaaa ttatctacat tcagagaaag
1261 ttttaagaaa agagtgatag gacaagacca cgacttttca gaatccagtg aggaggaggc
1321 gcccgcagaa gcctcaagcg gggcactgag aagcaagcat ggtgagaagg ctcctatgac
1381 ttctagaagt acatctactt ggagaatacc cagcaggaag agacgtttca gcagtagtga
1441 cttttcagac ctgagtaatg gagaagagct tcaggaaacc tgcagctcat ccctaagaag
1501 agggtcaggt aaagaagatt aggatgccaa gacttggcct gcagaatgtc aggaatgtga
1561 attaaaagct gctgtttcca gacgcttttt attctgagca ccttcactac cttgtatcca
1621 gttcatctgg gaactccttt ttgcatttta gaaaatggaa agaggcagga aattatgata
1681 aactcatgtt taacagaaag agtttcactg actaaatgta tgtaattata ttttgttgtt
1741 gtagaagaaa taaatagcaa atttgtggta ttcttttttt taaaaaaaaa aaaaaaaaaa
1801 aaaaaaaaaa aa
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