LOCUS BC011556 2868 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 20, mRNA (cDNA
clone MGC:20004 IMAGE:4651697), complete cds.
ACCESSION BC011556
VERSION BC011556.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2868)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2868)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: o Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14251211.
FEATURES Location/Qualifiers
source 1..2868
/db_xref="H-InvDB:HIT000035286"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20004 IMAGE:4651697"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2868
/gene="DDX20"
/gene_synonym="DKFZp434H052"
/gene_synonym="DP103"
/gene_synonym="GEMIN3"
/db_xref="GeneID:11218"
/db_xref="HGNC:HGNC:2743"
/db_xref="MIM:606168"
CDS 11..2485
/gene="DDX20"
/gene_synonym="DKFZp434H052"
/gene_synonym="DP103"
/gene_synonym="GEMIN3"
/codon_start=1
/product="DEAD (Asp-Glu-Ala-Asp) box polypeptide 20"
/protein_id="AAH11556.1"
/db_xref="GeneID:11218"
/db_xref="HGNC:HGNC:2743"
/db_xref="MIM:606168"
/translation="MAAAFEASGALAAVATAMPAEHVAVQVPAPEPTPGPVRILRTAQ
DLSSPRTRTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDL
IVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGL
ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLE
EGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGL
KQYYKVVNSYPLAHKVFEEKTQHLQELFSRIPFNQALVFSNLHSRAQHLADILSSKGF
PAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWET
YMHRIGRAGRFGTLGLTVTYCCRGEEENMMMRIAQKCNINLLPLPDPIPSGLMEECVD
WDVEVKAAVHTYGIASVPNQPLKKQIQKIERTLQIQKAHGDHMASSRNNSVSGLSVKS
KNNTKQKLPVKSHSECGIIEKATSPKELGCDRQSEEQMKNSVQTPVENSTNSQHQVKE
ALPVSLPQIPCLSSFKIHQPYTLTFAELVEDYEHYIKEGLEKPVEIIRHYTGPGDQTV
NPQNGFVRNKVTEQRVPVLASSSQSGDSESDSDSYSSRTSSQSKGNKSYLEGSSDNQL
KDSESTPVDDRISLEQPPNGSDTPNPEKYQESPGIQMKTRLKEGASQRAKQSRRNLPR
RSSFRLQTEAQEDDWYDCHREIRLSFSDTYQDYEEYWRAYYRAWQEYYAAASHSYYWN
AQRHPSWMAAYHMNTIYLQEMMHSNQ"
BASE COUNT 859 a 602 c 646 g 761 t
ORIGIN
1 cgcggctacc atggcggcgg catttgaagc ctcgggagcc ttagcggcag tggcgactgc
61 tatgccggct gagcatgtgg ccgtgcaggt cccggcccca gagccaacac ccgggcctgt
121 gaggatcctg cggaccgctc aggatctcag cagcccgcgg acccgcacgg gggatgtgct
181 gttggcggag ccggccgact tcgagtcact gctgctttcg cggccggtgc tggaggggct
241 gcgggcggcc ggcttcgaga ggccctcgcc ggtgcagctc aaggccatcc cgctggggcg
301 ctgcgggctc gatttaattg ttcaagctaa atctggcacc gggaaaacct gtgtgttctc
361 caccatagct ttggactctc ttgttcttga aaacttaagt acccagattt tgatcttggc
421 tcctacaaga gaaattgctg tacagataca ttctgttatt acagccattg gaataaaaat
481 ggaaggctta gagtgtcatg tctttattgg agggacccca ttatcacaag acaaaaccag
541 acttaaaaag tgtcatattg ctgttggatc tcctggcaga attaagcaac tcatagaact
601 tgactacttg aacccaggca gtatacgcct ctttattctt gatgaagcag ataagctttt
661 agaagaaggc agcttccagg agcaaataaa ttggatttat tcttccttgc ctgccagtaa
721 acagatgctg gcagtatcag ctacttatcc cgaatttttg gctaatgctt tgacaaagta
781 catgagagat cccacttttg taagactgaa ttccagtgat ccaagtctca taggtttgaa
841 gcagtattac aaagttgtca attcataccc tttggcacat aaggtttttg aggaaaagac
901 tcagcattta caggaactgt tcagcagaat tccatttaat caagctttag tcttttctaa
961 tttgcacagc agagcacaac atttggctga tatcctttct tctaaaggct ttcctgctga
1021 gtgcatttca ggcaatatga atcagaatca gcgtcttgat gctatggcta aactgaagca
1081 ctttcattgc agagtcctca tttccacaga tttgacttct cgtgggattg atgctgagaa
1141 ggtgaatctg gttgtaaatc tggatgtacc attggattgg gagacataca tgcatcggat
1201 tgggagagct ggccgttttg gtacattggg gctgacagtg acctactgtt gccggggaga
1261 ggaagaaaat atgatgatga gaattgccca gaaatgtaat atcaaccttc tccctttacc
1321 agatcccatt ccttctggtc tgatggaaga atgtgtggat tgggatgtgg aagttaaagc
1381 tgctgtgcat acatatggta tagcaagtgt acctaaccaa cccttaaaaa agcaaattca
1441 gaaaatagag agaacccttc aaattcagaa agctcatggt gaccacatgg cttcctctag
1501 aaataattct gtatctggac tatcagtcaa atcaaaaaat aataccaaac aaaagcttcc
1561 tgtgaaaagc cactcagaat gtggaatcat agaaaaagca acatcaccaa aagaactggg
1621 ctgtgacagg caatccgaag agcaaatgaa gaattctgtt cagactcccg ttgaaaactc
1681 caccaacagt cagcaccagg tcaaagaagc tttacctgtg tcactccccc agattccttg
1741 tctgtcttcc tttaaaatcc atcagccata cacgttgact tttgctgaat tggtagagga
1801 ttatgaacat tatattaaag aggggttaga gaaacctgtg gaaatcatca ggcactacac
1861 aggccctggg gatcagactg tgaatcctca aaatggtttt gtgagaaata aagttactga
1921 acagagagtc cctgtattgg caagtagtag ccaatctgga gactctgaga gtgacagtga
1981 ttcttacagc tcaagaacct cttcccagag caaaggaaat aagtcatact tggaaggctc
2041 ttctgataat cagctgaaag actctgaatc tacgcctgtg gatgatcgta tttctttgga
2101 acaaccacca aatggaagtg acacccccaa tccagagaaa tatcaagaat cacctggaat
2161 ccagatgaag acaagactta aagagggggc tagccagaga gctaagcaga gccggagaaa
2221 cctacccagg cggtcttcct tcagattgca gactgaagcc caggaagatg attggtatga
2281 ctgtcatagg gaaatacgtc tgagtttttc tgatacctat caggattatg aggagtactg
2341 gagagcttac tacagggcat ggcaagaata ttatgctgcc gcttctcatt catattattg
2401 gaatgctcag agacatccaa gttggatggc agcttatcac atgaatacca tttatctaca
2461 agaaatgatg catagtaacc agtgattata ggatatacct gagaccatca ggaactgtca
2521 acaaatgata cctttggata tccatcctcc tcgacttata gtacagtggt gtatagtggc
2581 atttctgata aacttgaaaa gacttgagtc tttccactgg gacacatcca tttttcagat
2641 tgttttgatt taggccaggt atattatctt catttttaag agtttcttta agaaacttca
2701 tcagattgtt gaaagataat ttttgggaca tagagctgaa agtttcaggg tgccattttc
2761 tataagatct tcccaaaaga aacatttaaa aagatgacat ataccaccac ttacttaaaa
2821 acaataaaag caatagattt gattagtaat aaaaaaaaaa aaaaaaaa
//