LOCUS BC011244 1867 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens stromal cell derived factor 4, mRNA (cDNA clone
MGC:18132 IMAGE:4153655), complete cds.
ACCESSION BC011244
VERSION BC011244.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1867)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1867)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 19 Row: h Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18699731.
FEATURES Location/Qualifiers
source 1..1867
/db_xref="H-InvDB:HIT000035200"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:18132 IMAGE:4153655"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1867
/gene="SDF4"
/gene_synonym="Cab45"
/gene_synonym="RP5-902P8.6"
/db_xref="GeneID:51150"
/db_xref="HGNC:HGNC:24188"
CDS 184..1272
/gene="SDF4"
/gene_synonym="Cab45"
/gene_synonym="RP5-902P8.6"
/codon_start=1
/product="stromal cell derived factor 4"
/protein_id="AAH11244.1"
/db_xref="GeneID:51150"
/db_xref="HGNC:HGNC:24188"
/translation="MVWPWVAMASRWGPLIGLAPCCLWLLGAVLLMDASARPANHSST
RERVANREENEILPPDHLNGVKLEMDGHLNRGFHQEVFLGKDLGGFDEDAEPRRSRRK
LMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWD
EYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTE
EEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDD
NWVKDRKKEFEELIDSNHDGIVTAEELESYMDPMNEYNALNEAKQMIAVADENQNHHL
EPEEVLKYSEFFTGSKLVDYARSVHEEF"
BASE COUNT 391 a 579 c 589 g 308 t
ORIGIN
1 ctcggatccc gagcgcgggg aggcagaccg actgtgagct gcttgtcccc atcctgcggc
61 cgtcctgggg acacagagcc ctccgtggtg cccggggatt ggattggagc caggacctca
121 cttcctcctc tgcccctgcc cctgcccctc ccagcacctg gcccacaccc tgcagcccgc
181 cccatggtct ggccctgggt ggcgatggcg tccaggtggg gtcccctcat tggcctggct
241 ccgtgctgcc tctggctcct gggggcagtc cttctgatgg acgcgtctgc acggcctgcc
301 aaccactcgt ccactcgaga gagagtagcc aacagggagg agaatgagat cctgccccca
361 gaccacctga acggggtgaa gctggagatg gacgggcacc tcaatcgcgg cttccaccag
421 gaggtcttcc taggcaagga cctgggtggc tttgatgagg acgcggagcc gcggcggagc
481 cggaggaagc tgatggtcat cttttccaag gtggatgtga acactgaccg gaagatcagt
541 gccaaggaga tgcagcgctg gatcatggag aagacggccg agcacttcca ggaggccatg
601 gaggagagca agacacactt ccgcgccgtg gaccctgacg gggacggtca cgtgtcttgg
661 gacgagtata aggtgaagtt tttggcgagt aaaggccata gcgagaagga ggttgccgac
721 gccatcaggc tcaacgagga actcaaagtg gacgaggaaa cacaggaagt cctggagaac
781 ctgaaggacc gctggtacca ggcggacagc ccccctgcag acctgctgct gacggaggag
841 gagttcctgt cgttcctcca ccccgagcac agccggggaa tgctcaggtt catggtgaag
901 gagatcgtcc gggacctgga ccaggacggt gacaagcagc tctctgtgcc cgagttcatc
961 tccctgcccg tgggcaccgt ggagaaccag cagggccagg acattgacga caactgggtg
1021 aaagacagaa aaaaggagtt tgaggagctc attgactcca accacgacgg catcgtgacc
1081 gccgaggagc tggagagcta catggacccc atgaacgagt acaacgcgct gaacgaggcc
1141 aagcagatga tcgccgtcgc cgacgagaac cagaaccacc acctggagcc cgaggaggtg
1201 ctcaagtaca gcgagttctt cacgggcagc aagctggtgg actacgcgcg cagcgtgcac
1261 gaggagtttt gagcgcccgg ccgcgccccg cgccgccccc cacgcaccac cggggcggcc
1321 tcgcgggtga ctccgggctc cgtggctgtc ccggacccca cctcttccct gccgcccgcc
1381 accggccgac cgaccgcggc tgccccagtt gatgagcggc gtgtcccctc tgcagcgcgc
1441 accccggcgg ggctttggct gtgacgcggt cggggcgcgg ggctgggctg tggccccgcg
1501 gcgccgcctc ctccctggtc cctcgaaatc gtggcatctc acttctgaga acgaaatctc
1561 gcttcagtca ctctgccgaa ggcgctgacg gcatcgcggc cggaacctct gggcccggcc
1621 cctcccaggg ccgccgctcc gtgggaaaaa acagctcctc catttccttg aaaactgaac
1681 gattattaaa aatagattaa acttcgctgg aaatgagtag ccaggaagtt caggggaggg
1741 tgccgggtcc ttcccgggcc tggcgtgtcg gagccaccca ggtcccgcag ctgccgctga
1801 gaaaatgcaa atatttgttg tgacaagaat cacatacatt tactttaaat ataaaaaaaa
1861 aaaaaaa
//