LOCUS BC010862 1365 bp mRNA linear HUM 12-OCT-2006
DEFINITION Homo sapiens SYF2 homolog, RNA splicing factor (S. cerevisiae),
mRNA (cDNA clone MGC:9401 IMAGE:3877165), complete cds.
ACCESSION BC010862
VERSION BC010862.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1365)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1365)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 14 Row: a Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46371996.
FEATURES Location/Qualifiers
source 1..1365
/db_xref="H-InvDB:HIT000035081"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9401 IMAGE:3877165"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_68"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1365
/gene="SYF2"
/gene_synonym="NTC31"
/gene_synonym="P29"
/db_xref="GeneID:25949"
/db_xref="HGNC:HGNC:19824"
/db_xref="MIM:607090"
CDS 27..758
/gene="SYF2"
/gene_synonym="NTC31"
/gene_synonym="P29"
/codon_start=1
/product="SYF2 homolog, RNA splicing factor (S.
cerevisiae)"
/protein_id="AAH10862.1"
/db_xref="GeneID:25949"
/db_xref="HGNC:HGNC:19824"
/db_xref="MIM:607090"
/translation="MAAIAASEVLVDSAEEGSLAAAAELAAQKREQRLRKFRELHLMR
NEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELKEEEKKKECAARGEDYEKVKLLE
ISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEF
FPTSNSLLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKF
NKKAERFYGKYTAEIKQNLERGTAV"
BASE COUNT 457 a 223 c 339 g 346 t
ORIGIN
1 ggaagtggga agagagaaag gttgtgatgg cggctatagc tgcatccgag gtgctggtgg
61 acagcgcgga ggaggggtcc ctcgctgcgg cggcggagct ggccgctcag aagcgcgaac
121 agagactgcg caaattccgg gagctgcacc tgatgcggaa tgaagctcgt aaattaaatc
181 accaggaagt tgtggaagaa gataaaagac taaaattacc tgcaaattgg gaagccaaaa
241 aagctcgttt ggagtgggaa ctaaaggaag aggaaaagaa aaaggaatgt gcggcaagag
301 gagaagacta tgagaaagtg aagttgctgg agatcagtgc agaagatgca gaaagatggg
361 agaggaaaaa gaagaggaaa aaccctgatc tgggattttc agattatgct gctgcccagt
421 tacgccagta tcatcggttg accaagcaga tcaaacctga catggaaaca tatgagagac
481 tgagagaaaa acatggagaa gagtttttcc caacatccaa tagtcttctt catggaacac
541 atgtgccttc cacagaggaa attgacagga tggtcataga tctggaaaaa cagattgaaa
601 aacgagacaa atatagccgg agacgtcctt ataatgatga tgcagatatc gactacatta
661 atgaaaggaa tgccaaattc aacaagaaag ctgaaagatt ctatgggaaa tacacagctg
721 aaattaaaca gaatttggaa agaggaacag ctgtctaatc ccttcaagaa ctgtttatag
781 aagcttgaga atggggtaaa aatttctgct agcaaaatca agttcttttt gaaattttat
841 cagtaatcca gaatttagta gtccatgcct tctcactcag catttagaaa taaaaatgtg
901 gtttcttaaa cgtatatcct ttcatgtata tttccacatt tttgtgcttg gatataagat
961 gtatttcttg tagtgaagtt gttttgtaat ctactttgta tacattctaa ttatattatt
1021 tttctatgta ttttaaatgt atatggctgt ttaatctttg aagcattttg ggcttaagat
1081 tgccagcagc acacatcaga tgcagtcatt gttgctatca gtgtggaatt tgatagagtc
1141 tagactcggg ccacttggag ttgtgtactc caaagctaag gacagtgatg aggaagatgg
1201 cagtggccac cggaggactg gagcagtccc tcctcatggc ggcctgtgac caaggtcggg
1261 gaggagtgga gctatccttc catgatctga tcatgtacag ttcccttttt aaaaagcaat
1321 aaatgcttgg gattagaatt tctaaaaaaa aaaaaaaaaa aaaaa
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