LOCUS BC010621 3215 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens peroxisomal biogenesis factor 5, mRNA (cDNA clone
MGC:9180 IMAGE:3872822), complete cds.
ACCESSION BC010621
VERSION BC010621.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3215)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3215)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC010621.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 13 Row: m Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37059745.
FEATURES Location/Qualifiers
source 1..3215
/db_xref="H-InvDB:HIT000035016"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9180 IMAGE:3872822"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3215
/gene="PEX5"
/gene_synonym="PTS1R"
/db_xref="GeneID:5830"
/db_xref="HGNC:HGNC:9719"
/db_xref="MIM:600414"
CDS 40..1935
/gene="PEX5"
/gene_synonym="PTS1R"
/codon_start=1
/product="peroxisomal biogenesis factor 5"
/protein_id="AAH10621.1"
/db_xref="GeneID:5830"
/db_xref="HGNC:HGNC:9719"
/db_xref="MIM:600414"
/translation="MAMRELVEAECGGANPLMKLAGHFTQDKALRQEGLRPGPWPPGA
PASEAASKPLGVASEDELVAEFLQDQNAPLVSRAPQTFKMDDLLAEMQQIEQSNFRQA
PQRAPGVADLALSENWAQEFLAAGDAVDVTQDYNETDWSQEFISEVTDPLSVSPARWA
EEYLEQSEEKLWLGEPEGTATDRWYDEYHPEEDLQHTASDFVAKVDDPKLANSEFLKF
VRQIGEGQVSLESGAGSGRAQAEQWAAEFIQQQGTSDAWVDQFTRPVNTSALDMEFER
AKSAIELQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEG
LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP
DNQTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI
LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS
VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE
AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL
TMFGLPQ"
BASE COUNT 730 a 768 c 947 g 770 t
ORIGIN
1 cggacgcgtg ggggcgctcg gcgagagctg gcggtcacca tggcaatgcg ggagctggtg
61 gaggccgaat gcgggggtgc caacccgctc atgaagctcg ccgggcactt cacccaggac
121 aaggcccttc ggcaggaggg attgaggcct ggcccctggc cccccggagc cccggcctct
181 gaggcagcct ccaagccttt gggagtagct tctgaagatg agttggtggc tgaattcctg
241 caggaccaga atgcacccct tgtgtcccgt gcccctcaga ccttcaagat ggatgacctc
301 ctggctgaga tgcagcagat tgagcagtca aacttccgcc aggctcccca gagagcccct
361 ggtgtggcag acttggcctt gtctgagaac tgggcccagg agtttcttgc agctggagat
421 gctgtggatg taactcagga ttataatgag actgactggt cccaagaatt catctctgaa
481 gttacagacc ccttgtctgt gtcccctgcc cgctgggctg aggaatattt ggagcaatca
541 gaggagaagc tgtggctggg agaacctgag ggaacagcca ccgatcgctg gtatgatgaa
601 tatcatcctg aggaggatct gcagcacacg gccagtgact ttgtggccaa agtggatgac
661 cccaaattgg ctaattctga gttcctgaaa ttcgtgcggc agattggcga agggcaggtg
721 tccctggagt ccggtgcagg gtcgggccga gctcaggcag aacagtgggc agcagagttt
781 atacagcagc agggtacatc agatgcctgg gttgaccagt tcacaagacc agtaaacaca
841 tctgcccttg atatggagtt tgaacgagcc aagtcagcta tagagttgca ggcagagttg
901 gaggagatgg caaaacggga tgctgaggcc cacccctggc tttctgacta tgatgacctt
961 acgtcagcta cctatgataa ggggtaccag tttgaggagg agaacccctt gcgtgatcac
1021 cctcagcctt ttgaagaagg gctgcggcgc cttcaggagg gggacctgcc aaatgctgtg
1081 ctgctttttg aggcagctgt gcagcaggat cctaagcaca tggaagcttg gcagtatctg
1141 ggtaccaccc aggcagagaa tgaacaagaa ctattagcca tcagtgcatt gcggaggtgt
1201 ctggagctaa agccagataa ccagacagca ctgatggcgc tggctgtgag cttcaccaac
1261 gagtccctgc agcgacaggc ctgtgaaacc ctacgagact ggctgcggta cacaccagcc
1321 tatgcccatc tggtgacacc tgctgaagaa ggggctggtg gggcaggact gggccccagc
1381 aagcgtatcc tgggatctct cttgtctgac tccctgtttc ttgaagtgaa agagctcttc
1441 ctggcagctg tgcggctgga ccctacctcc attgaccctg atgtgcagtg tggcttggga
1501 gtccttttca acctgagtgg ggagtatgac aaggccgtgg actgcttcac agctgccctc
1561 agcgttcgtc ccaatgacta tttgctgtgg aataagctag gcgccaccct ggccaatgga
1621 aaccagagtg aagaagcagt agctgcgtac cgccgggccc tcgagctcca gcctggctat
1681 atccggtccc gctataacct gggcatcagc tgcatcaacc tcggggctca ccgggaggct
1741 gtggagcact ttctggaggc cctgaacatg cagaggaaaa gccggggccc ccggggtgaa
1801 ggaggtgcca tgtcggagaa catctggagc accctgcgtt tggcattgtc tatgttaggc
1861 cagagcgatg cctatggggc agccgacgcg cgggatctgt ccaccctcct aactatgttt
1921 ggcctgcccc agtgacagtg ggacgggctg ccctgtgagt gtccacctgg agggatcccc
1981 gctttggatg tgattccctc tccccaaatg ggcctaccaa gggggcgggc tgatgaccat
2041 aagcggtacg gcctttcagg agctgcctca acgtaggggt gggtagtctg tgttctagtt
2101 cctacataat tgtaggaaaa tgagctgtgt catctctgag tcccttggta attcaagggc
2161 tgtacatcca gctacagatc tctctgctca tcatgccctt tcttggtgct gctttttggg
2221 taggacccca cgatttaggg taactgttat catcagctgc catttctgat agggtctacc
2281 acatctgtaa tgtctgtcct ttcccccact tttactggga attgatagtc cagcttcctt
2341 gggcagtgta agtaggaggt tcatctgctg tgcgcctcta atgtctgtct ggatgggatg
2401 tgttaggagt tggcctgttg ggttgaattg ttgatttggc tgagcagagc tgagttttgg
2461 taggagtgct catggttctg tcattcttgg acctctcctg gctgagctct gattccctgt
2521 gagcacgatg ctgatgcaat agtcctgtgt catcactgca gcggtcctca ggagctgcca
2581 gggccaattg ctacagagtg tctgggtgtg tggcatagga ggaaggtttg cttgtgaaat
2641 gaggctgggt gggagcgggg agggactaga tcagaagaga tcaagggctg tattcaggaa
2701 cgttggtggg aggacagagc aagtgggaag ggggtatggt gagtgcggca atccctcatc
2761 ctcttagaag cacctgtgaa tgggaattga gccaactgtt atagaaaatt ggttcagaaa
2821 gtgcaatctt gccagatttc tagcaaatag gttcagtgtt accataagcc tttgctgtac
2881 ttcttgaaat gtttctaggg gagagcattg gaaaatcccc ttcccccatc tagatcgaag
2941 gaagatgagg gagcagcttg gattcttctc agttgtcccc tgcatgggga gatacactaa
3001 cccccagaaa tgactgctaa gcctcttgcc ttgtctttag tagctaatga tcagagagat
3061 ttttttttta aactaccatg gtcccaggat tccatcctga aatttatttt tctttgtatg
3121 aatatgtgta aatgatttaa aaataaaact gtaaaatatt tgtacgaaga ataaatggaa
3181 ctgatgtggg taaaaaaaaa aaaaaaaaaa aaaaa
//