LOCUS BC010450 2075 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens papillary renal cell carcinoma
(translocation-associated), mRNA (cDNA clone MGC:17178
IMAGE:4179105), complete cds.
ACCESSION BC010450
VERSION BC010450.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2075)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2075)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: i Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40807446.
FEATURES Location/Qualifiers
source 1..2075
/db_xref="H-InvDB:HIT000034951"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17178 IMAGE:4179105"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2075
/gene="PRCC"
/gene_synonym="MGC17178"
/gene_synonym="MGC4723"
/gene_synonym="RCCP1"
/gene_synonym="TPRC"
/db_xref="GeneID:5546"
/db_xref="HGNC:HGNC:9343"
/db_xref="MIM:179755"
CDS 219..1694
/gene="PRCC"
/gene_synonym="MGC17178"
/gene_synonym="MGC4723"
/gene_synonym="RCCP1"
/gene_synonym="TPRC"
/codon_start=1
/product="papillary renal cell carcinoma
(translocation-associated)"
/protein_id="AAH10450.1"
/db_xref="GeneID:5546"
/db_xref="HGNC:HGNC:9343"
/db_xref="MIM:179755"
/translation="MSLVAYASSDESEPDEAEPEPEEEEAVAPTSGPALGGLFASLPA
PKGPALLPPPPQMLAPAFPPPLLLPPPTGDPRLQPPPPLPFGLGGFPPPPGVSPAEAA
GVGEGLGLGLPSPRGPGLNLPPPIGGAGPPLGLPKPKKRKEPVKIAAPELHKGDSDSE
EDEPTKKKTILQGSSEGTGLSALLPQPKNLTVKETNRLLLPHAFSRKPSDGSPDTKPS
RLASKTKTSSLAPVVGTTTTTPSPSAIKAAAKSAALQVTKQITQEEDDSDEEVAPENF
FSLPEKAEPPGVEPYPYPIPTVPEELPPGTEPEPAFQDDAANAPLEFKMAAGSSGAPW
MPKPGDDYSYNQFSTYGDANAAGAYYQDYYSGGYYPAQDPALVPTQEIAPDASFIDDE
AFKRLQGKRNRGREEINFVEIKGDDQLSGAQQWMTKSLTEEKTMKSFSKKKGEQPTGQ
QRRKHQITYLIHQAKERELELKNTWSENKLSRRQTQAKYGF"
BASE COUNT 485 a 621 c 554 g 415 t
ORIGIN
1 ttgcccggga ctaggagctt aagtgaagag gtacgccttg ttcggtggaa atcagccgta
61 gccatgagtt tctgccgggg ctagccctag agtacggagc aggcggactt ttcggttccc
121 cgccccgcca ggtggcgggg cctactaggc ctccgggcat ccccggtctc aagtaggcct
181 catctgccgg caagggcgcc cgaaacgcgg gaggcgccat gtcgctggtt gcttacgcca
241 gcagcgatga gagcgagccg gatgaggctg agcccgagcc ggaggaagag gaggcggtgg
301 ctcctacatc tgggcccgct ttagggggct tgttcgcttc tctccctgcg cccaagggtc
361 cggccttgct gcctccgccc cctcagatgc tggcgccagc ctttcccccg ccgctgttgc
421 ttcccccacc caccggagac cccaggcttc agcctcctcc ccccttgccc ttcggcctgg
481 gaggcttccc cccacctcca ggcgtgagcc cggctgaagc ggcgggagtt ggggagggac
541 tgggattggg gttgccctcg ccccgaggcc ctggcctcaa tctgccccct ccaattggcg
601 gtgccggtcc cccgctgggg cttcccaagc caaagaagag gaaagagccc gtgaagatcg
661 cggcgccgga gttgcataag ggagattcag attctgagga agatgaaccc acaaagaaga
721 aaactatcct tcagggatcc agtgagggga ctggtttgtc tgccttgctt ccccaaccta
781 aaaacctgac tgtgaaagag actaacaggt tgctcctgcc ccatgccttc tcccgcaaac
841 cctcggatgg ctcccctgat actaagccct ccagactggc ttctaagacc aagacttcct
901 ctcttgcccc tgttgtgggc accacaacca ccactccgtc gccctctgct atcaaggctg
961 ctgccaagag tgctgccctg caggtgacaa agcagatcac gcaggaagaa gacgacagtg
1021 atgaggaagt agcccccgaa aactttttct ccctccctga aaaggctgag ccacctggag
1081 ttgagccata cccttacccc atccccactg tccctgaaga gctgcctcca ggcacggaac
1141 cagagccggc tttccaggac gatgcagcca atgcccccct tgaattcaag atggcagcag
1201 gttcaagtgg ggccccttgg atgcctaagc ctggggacga ctacagctac aatcagtttt
1261 ccacatatgg cgatgccaat gccgctggtg cttattatca ggattattac agtggtggct
1321 actatcctgc acaggacccg gccctggtcc ccacccagga aattgcccca gatgcctcct
1381 tcatcgatga cgaagcattt aagcggctgc agggcaagag gaaccgaggg agagaagaaa
1441 tcaactttgt ggagatcaaa ggtgatgacc agctcagtgg ggcccagcaa tggatgacta
1501 agtcattgac agaagagaaa accatgaagt cattcagcaa aaagaaaggt gagcagccaa
1561 caggccagca gcggcggaaa caccagatca catatcttat tcatcaggcc aaggagcggg
1621 agctggaact gaagaacacc tggtcagaga acaagctcag ccgccgtcag acccaagcca
1681 aatatggatt ctagggctct ggaactgatt gctcccagga tctcctgcca gcccagctgg
1741 cctggccccc agcttcacct ctgggacccc agctgctcta agcccaggat ctctttcccc
1801 aaggacccag ccctcgcctc tgcgagaatg aacatatttg atagattttt cttaacaagt
1861 tagaaaattc agctcctttc tgtcctggag ctagcaaaga cttgtgtgat gcctccgaag
1921 gggctctgag ttctggggtg ggagttttgc tctctgtcag gtgtgataaa atgttgaacc
1981 ctccccacca ccactttttt tttttttaaa ccagggatgt ctgttgaaat aaaacattca
2041 gtctgacaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//