LOCUS BC010430 1554 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens Y box binding protein 1, mRNA (cDNA clone MGC:15819
IMAGE:3506647), complete cds.
ACCESSION BC010430
VERSION BC010430.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1554)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1554)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 23 Row: d Column: 3
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..1554
/db_xref="H-InvDB:HIT000034938"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15819 IMAGE:3506647"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1554
/gene="YBX1"
/gene_synonym="BP-8"
/gene_synonym="CSDA2"
/gene_synonym="CSDB"
/gene_synonym="DBPB"
/gene_synonym="MDR-NF1"
/gene_synonym="NSEP-1"
/gene_synonym="YB-1"
/gene_synonym="YB1"
/db_xref="GeneID:4904"
/db_xref="HGNC:HGNC:8014"
/db_xref="MIM:154030"
CDS 114..1088
/gene="YBX1"
/gene_synonym="BP-8"
/gene_synonym="CSDA2"
/gene_synonym="CSDB"
/gene_synonym="DBPB"
/gene_synonym="MDR-NF1"
/gene_synonym="NSEP-1"
/gene_synonym="YB-1"
/gene_synonym="YB1"
/codon_start=1
/product="Y box binding protein 1"
/protein_id="AAH10430.1"
/db_xref="GeneID:4904"
/db_xref="HGNC:HGNC:8014"
/db_xref="MIM:154030"
/translation="MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGPGGLTS
AAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRS
VGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQ
NYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVM
EGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQP
PQRRYRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE"
BASE COUNT 498 a 383 c 382 g 291 t
ORIGIN
1 gcggacccca gagagccctg agcagcccca ccgccgccgc cggcctagtt accatcacac
61 cccgggagga gccgcagctg ccgcagccgg ccccagtcac catcaccgca accatgagca
121 gcgaggccga gacccagcag ccgcccgccg ccccccccgc cgcccccgcc ctcagcgccg
181 ccgacaccaa gcccggcact acgggcagcg gcgcagggag cggtggcccg ggcggcctca
241 catcggcggc gcctgccggc ggggacaaga aggtcatcgc aacgaaggtt ttgggaacag
301 taaaatggtt caatgtaagg aacggatatg gtttcatcaa caggaatgac accaaggaag
361 atgtatttgt acaccagact gccataaaga agaataaccc caggaagtac cttcgcagtg
421 taggagatgg agagactgtg gagtttgatg ttgttgaagg agaaaagggt gcggaggcag
481 caaatgttac aggtcctggt ggtgttccag ttcaaggcag taaatatgca gcagaccgta
541 accattatag acgctatcca cgtcgtaggg gtcctccacg caattaccag caaaattacc
601 agaatagtga gagtggggaa aagaacgagg gatcggagag tgctcccgaa ggccaggccc
661 aacaacgccg gccctaccgc aggcgaaggt tcccacctta ctacatgcgg agaccctatg
721 ggcgtcgacc acagtattcc aaccctcctg tgcagggaga agtgatggag ggtgctgaca
781 accagggtgc aggagaacaa ggtagaccag tgaggcagaa tatgtatcgg ggatatagac
841 cacgattccg caggggccct cctcgccaaa gacagcctag agaggacggc aatgaagaag
901 ataaagaaaa tcaaggagat gagacccaag gtcagcagcc acctcaacgt cggtaccgcc
961 gcaacttcaa ttaccgacgc agacgcccag aaaaccctaa accacaagat ggcaaagaga
1021 caaaagcagc cgatccacca gctgagaatt cgtccgctcc cgaggctgag cagggcgggg
1081 ctgagtaaat gccggcttac catctctacc atcatccggt ttagtcatcc aacaagaaga
1141 aatatgaaat tccagcaata agaaatgaac aaaagattgg agctgaagac ctaaagtgct
1201 tgctttttgc ccgttgacca gataaaataa ctatctgcat tatctatgca gcatggggtt
1261 tttattattt ttacctaaag acgtctcttt ttggtaataa caaacgtgtt ttttaaaaaa
1321 gcctggtttt tctcaatacg cctttaaagg tttttaaatt gtttcatatc tggtcaagtt
1381 gagattttta agaacttcat ttttaatttg taataaaagt ttacaacttg attttttcaa
1441 aaaagtcaac aaactgcaag cacctgttaa taaaggtctt aaataataaa aaaaaaaaaa
1501 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaccc tgag
//