LOCUS BC010308 2008 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chromosome 22 open reading frame 28, mRNA (cDNA clone
MGC:5037 IMAGE:3451576), complete cds.
ACCESSION BC010308
VERSION BC010308.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2008)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2008)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: h Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31542944.
FEATURES Location/Qualifiers
source 1..2008
/db_xref="H-InvDB:HIT000034887"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5037 IMAGE:3451576"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2008
/gene="C22orf28"
/gene_synonym="DJ149A16.6"
/gene_synonym="HSPC117"
/gene_synonym="RP1-149A16.6"
/db_xref="GeneID:51493"
/db_xref="HGNC:HGNC:26935"
CDS 82..1599
/gene="C22orf28"
/gene_synonym="DJ149A16.6"
/gene_synonym="HSPC117"
/gene_synonym="RP1-149A16.6"
/codon_start=1
/product="chromosome 22 open reading frame 28"
/protein_id="AAH10308.1"
/db_xref="GeneID:51493"
/db_xref="HGNC:HGNC:26935"
/translation="MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEK
LMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAF
DMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGV
IPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQ
LGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVA
MEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAK
VFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDY
QLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLD
KLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG"
BASE COUNT 532 a 433 c 555 g 488 t
ORIGIN
1 ggcggtgctc tgagaagccg gactacgcgg cagcggctct tcaaagcgga gccgggagtt
61 tttgctacag ttttcgccac catgagtcgc agctataatg atgagctgca gttcttggag
121 aagatcaata aaaactgctg gaggatcaag aagggcttcg tgcccaacat gcaggttgaa
181 ggtgttttct atgtgaatga tgctctggag aaattgatgt ttgaggaatt aaggaatgcc
241 tgtcgaggtg gtggtgttgg tggcttcctg ccagccatga aacagattgg caatgtggca
301 gccctgcctg gaattgttca tcgatctatt gggcttcctg atgtccattc aggatatggg
361 tttgctattg ggaacatggc agcctttgat atgaatgacc ctgaagcagt agtatcccca
421 ggtggtgtcg ggtttgacat caactgtggt gtccgcttgc taagaaccaa tttagatgaa
481 agtgatgtcc agcctgtgaa ggagcaactt gcccaagcta tgtttgacca cattcctgtt
541 ggggtggggt caaaaggtgt catcccaatg aatgccaaag acttggagga ggccttggag
601 atgggggtgg actggtcctt aagagaaggg tatgcctggg ctgaagacaa ggagcactgc
661 gaggagtacg gaaggatgct gcaagctgac cccaataaag tttctgcaag ggcgaagaaa
721 agaggccttc ctcagttggg gaccctggga gcaggcaacc attatgcaga aatccaggtt
781 gtggatgaga ttttcaatga gtatgctgct aaaaaaatgg gcatcgacca taagggacag
841 gtgtgtgtga tgatccacag tggaagcaga ggcttgggcc accaagtagc cacagatgcg
901 ctggtagcta tggagaaggc catgaagaga gacaagatta tagtcaatga tcggcagttg
961 gcttgtgctc gaatcgcttc cccagagggt caagactatc tgaagggaat ggcagctgct
1021 gggaactatg cctgggtcaa ccgctcttcc atgaccttct taacccgtca ggctttcgcc
1081 aaggtcttca acacaacccc tgatgacttg gacctacatg tgatctatga tgtttctcac
1141 aacattgcca aagtggagca gcatgtggtg gacggaaagg aacggacact gttagtacac
1201 aggaagggat ccacccgcgc tttccctcct caccatcccc tcattgctgt tgattaccaa
1261 ctcactggac agccagtgct cattggtggc accatgggaa cctgtagtta tgttcttact
1321 ggcactgaac agggcatgac tgagaccttt ggaacaacct gtcatggagc gggccgtgca
1381 ttgtcccgag caaaatctcg acgtaattta gatttccagg atgtcttaga caaattggca
1441 gatatgggaa ttgcgatccg tgttgcctca cccaaactgg ttatggaaga ggctcctgag
1501 tcctataaga atgtgacaga tgtggtaaat acctgccatg atgctggaat cagcaagaaa
1561 gccattaaac tgagaccaat tgctgtgatc aaaggataga accttggaca gcagggctgc
1621 ctgacaccac caaccctctc tgaagtggaa gtggactgac atgctcttct gacatcagac
1681 tcaaggcggg acaagttgca aagtgtgcag ctgtaactgc tcacgccaaa atggctgatg
1741 gggaggctgc tgctttcagg ggcccgtgct tgtaaaataa ccttccagga agaggcacat
1801 tgcccacctt tggaaaggga ggaatatgcc ttctccttgg ttgttccaca gagttttagg
1861 aaaatctgtt agggatgggt agatgtcaaa ctgccttacg cagtcatact gatctttagc
1921 catcagattg atcttcttca caccaagctc tgtttacatt ccgagaggtg tcatgaagaa
1981 agttctgttc aataaaaaaa aaaaaaaa
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