LOCUS BC010023 2056 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens homeobox A9, mRNA (cDNA clone MGC:19648
IMAGE:2987818), complete cds.
ACCESSION BC010023
VERSION BC010023.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2056)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2056)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC010023.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 27 Row: a Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..2056
/db_xref="H-InvDB:HIT000034746"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:19648 IMAGE:2987818"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2056
/gene="HOXA9"
/gene_synonym="ABD-B"
/gene_synonym="HOX1.7"
/gene_synonym="MGC1934"
/db_xref="GeneID:3205"
/db_xref="HGNC:HGNC:5109"
/db_xref="MIM:142956"
CDS 54..872
/gene="HOXA9"
/gene_synonym="ABD-B"
/gene_synonym="HOX1.7"
/gene_synonym="MGC1934"
/codon_start=1
/product="homeobox A9"
/protein_id="AAH10023.1"
/db_xref="GeneID:3205"
/db_xref="HGNC:HGNC:5109"
/db_xref="MIM:142956"
/translation="MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAAT
LAEHPDFSPCSFQSKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAA
PDGRYMRSWLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACG
SPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQT
LELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE"
BASE COUNT 546 a 485 c 492 g 533 t
ORIGIN
1 agtttcataa tttccgtggg tcgggccggg cgggccaggc gctgggcacg gtgatggcca
61 ccactggggc cctgggcaac tactacgtgg actcgttcct gctgggcgcc gacgccgcgg
121 atgagctgag cgttggccgc tatgcgccgg ggaccctggg ccagcctccc cggcaggcgg
181 cgacgctggc cgagcacccc gacttcagcc cgtgcagctt ccagtccaag gcgacggtgt
241 ttggcgcctc gtggaaccca gtgcacgcgg cgggcgccaa cgctgtaccc gctgcggtgt
301 accaccacca tcaccaccac ccctacgtgc acccccaggc gcccgtggcg gcggcggcgc
361 cggacggcag gtacatgcgc tcctggctgg agcccacgcc cggtgcgctc tccttcgcgg
421 gcttgccctc cagccggcct tatggcatta aacctgaacc gctgtcggcc agaaggggtg
481 actgtcccac gcttgacact cacactttgt ccctgactga ctatgcttgt ggttctcctc
541 cagttgatag agaaaaacaa cccagcgaag gcgccttctc tgaaaacaat gctgagaatg
601 agagcggcgg agacaagccc cccatcgatc ccaataaccc agcagccaac tggcttcatg
661 cgcgctccac tcggaaaaag cggtgcccct atacaaaaca ccagaccctg gaactggaga
721 aagagtttct gttcaacatg tacctcacca gggaccgcag gtacgaggtg gctcgactgc
781 tcaacctcac cgagaggcag gtcaagatct ggttccagaa ccgcaggatg aaaatgaaga
841 aaatcaacaa agaccgagca aaagacgagt gatgccattt gggcttattt agaaaaaagg
901 gtaagctaga gagaaaaaga aagaactgtc cgtccccctt ccgccttctc ccttttctca
961 cccccaccct agcctccacc atccccgcac aaagcggctc taaacctcag gccacatctt
1021 ttccaaggca aaccctgttc aggctggctc gtaggcctgc cgctttgatg gaggaggtat
1081 tgtaagcttt ccattttcta taagaaaaag gaaaagttga ggggggggca ttagtgctga
1141 tagctgtgtg tgttagcttg tatatatatt tttaaaaatc tacctgttcc tgacttaaaa
1201 caaaaggaaa gaaactacct ttttataatg cacaactgtt gatggtaggc tgtatagttt
1261 ttagtctgtg tagttaattt aatttgcagt ttgtgcggca gattgctctg ccaagatact
1321 tgaacactgt gttttattgt ggtaattatg ttttgtgatt caaacttctg tgtactgggt
1381 gatgcaccca ttgtgattgt ggaagataga attcaatttg aactcaggtt gtttatgagg
1441 ggaaaaaaac agttgcatag agtatagctc tgtagtggaa tatgtcttct gtataactag
1501 gctgttaacc tatgattgta aagtagctgt aagaatttcc cagtgaaata aaaaaaaatt
1561 ttaagtgttc tcggggatgc atagattcat cattttctcc accttaaaaa tgcgggcatt
1621 taagtctgtc cattatctat atagtcctgt cttgtctatt gtatatataa tctatatgat
1681 taaagaaaat atgcataatc agacaagctt gaatattgtt tttgcaccag acgaacagtg
1741 aggaaattcg gagctataca tatgtgcaga aggttactac ctagggttta tgcttaattt
1801 taatcggagg aaatgaatgc tgattgtaac ggagttaatt ttattgataa taaattatac
1861 actatgaaac cgccattggg ctactgtaga tttgtatcct tgatgaatct ggggtttcca
1921 tcagactgaa cttacactgt atattttgca atagttacct caaggcctac tgaccaaatt
1981 gttgtgttga gatgatattt aactttttgc caaataaaat atattgattc ttttctaaaa
2041 aaaaaaaaaa aaaaaa
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