LOCUS BC010016 1254 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens CD47 molecule, mRNA (cDNA clone MGC:15298
IMAGE:4303534), complete cds.
ACCESSION BC010016
VERSION BC010016.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1254)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1254)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC010016.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: p Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 68223312.
FEATURES Location/Qualifiers
source 1..1254
/db_xref="H-InvDB:HIT000034740"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15298 IMAGE:4303534"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1254
/gene="CD47"
/gene_synonym="IAP"
/gene_synonym="OA3"
/db_xref="GeneID:961"
/db_xref="HGNC:HGNC:1682"
/db_xref="MIM:601028"
CDS 83..1000
/gene="CD47"
/gene_synonym="IAP"
/gene_synonym="OA3"
/codon_start=1
/product="CD47 molecule"
/protein_id="AAH10016.1"
/db_xref="GeneID:961"
/db_xref="HGNC:HGNC:1682"
/db_xref="MIM:601028"
/translation="MWPLVAALLLGSACCGSAQLLFNKTKSVEFTFCNDTVVIPCFVT
NMEAQNTTEVYVKWKFKGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDK
SDAVSHTGNYTCEVTELTREGETIIELKYRVVSWFSPNENILIVIFPIFAILLFWGQF
GIKTLKYRSGGMDEKTIALLVAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTG
ILILLHYYVFSTAIGLTSFVIAILVIQVIAYILAVVGLSLCIAACIPMHGPLLISGLS
ILALAQLLGLVYMKFVASNQKTIQPPRNN"
BASE COUNT 370 a 230 c 276 g 378 t
ORIGIN
1 gtcggtcctg cctgtaacgg cggcggcggc tgctgctcca gacacctgcg gcggcggcgg
61 cgaccccgcg gcgggcgcgg agatgtggcc cctggtagcg gcgctgttgc tgggctcggc
121 gtgctgcgga tcagctcagc tactatttaa taaaacaaaa tctgtagaat tcacgttttg
181 taatgacact gtcgtcattc catgctttgt tactaatatg gaggcacaaa acactactga
241 agtatacgta aagtggaaat ttaaaggaag agatatttac acctttgatg gagctctaaa
301 caagtccact gtccccactg actttagtag tgcaaaaatt gaagtctcac aattactaaa
361 aggagatgcc tctttgaaga tggataagag tgatgctgtc tcacacacag gaaactacac
421 ttgtgaagta acagaattaa ccagagaagg tgaaacgatc atcgagctaa aatatcgtgt
481 tgtttcatgg ttttctccaa atgaaaatat tcttattgtt attttcccaa tttttgctat
541 actcctgttc tggggacagt ttggtattaa aacacttaaa tatagatccg gtggtatgga
601 tgagaaaaca attgctttac ttgttgctgg actagtgatc actgtcattg tcattgttgg
661 agccattctt ttcgtcccag gtgaatattc attaaagaat gctactggcc ttggtttaat
721 tgtgacttct acagggatat taatattact tcactactat gtgtttagta cagcgattgg
781 attaacctcc ttcgtcattg ccatattggt tattcaggtg atagcctata tcctcgctgt
841 ggttggactg agtctctgta ttgcggcgtg tataccaatg catggccctc ttctgatttc
901 aggtttgagt atcttagctc tagcacaatt acttggacta gtttatatga aatttgtggc
961 ttccaatcag aagactatac aacctcctag gaataactga agtgaagtga tggactccga
1021 tttggagagt agtaagacgt gaaaggaata cacttgtgtt taagcaccat ggccttgatg
1081 attcactgtt ggggagaaga aacaagaaaa gtaactggtt gtcacctatg agacccttac
1141 gtgattgtta gttaagtttt tattcaaagc agctgtaatt tagttaataa aataattatg
1201 atctatgttg tttgcccaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
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