LOCUS BC010005 2691 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens PDX1 C-terminal inhibiting factor 1, mRNA (cDNA clone
MGC:15106 IMAGE:4131938), complete cds.
ACCESSION BC010005
VERSION BC010005.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2691)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2691)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC010005.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: l Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41327716.
FEATURES Location/Qualifiers
source 1..2691
/db_xref="H-InvDB:HIT000034731"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15106 IMAGE:4131938"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2691
/gene="PCIF1"
/db_xref="GeneID:63935"
/db_xref="HGNC:HGNC:16200"
CDS 287..2401
/gene="PCIF1"
/codon_start=1
/product="PDX1 C-terminal inhibiting factor 1"
/protein_id="AAH10005.1"
/db_xref="GeneID:63935"
/db_xref="HGNC:HGNC:16200"
/translation="MANENHGSPREEASLLSHSPGTSNQSQPCSPKPIRLVQDLPEEL
VHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLGQHDVISDPLGLNATPLPQDSSLVE
TPPAENKPRKRQLSEEQPSGNGVKKPKIEIPVTPTGQSVPSSPSIPGTPTLKMWGTSP
EDKQQAALLRPTEVYWDLDIQTNAVIKHRGPSEVLPPHPEVELLRSQLILKLRQHYRE
LCQQREGIEPPRESFNRWMLERKVVDKGSDPLLPSNCEPVVSPSMFREIMNDIPIRLS
RIKFREEAKRLLFKYAEAARRLIESRSASPDSRKVVKWNVEDTFSWLRKDHSASKEDY
MDRLEHLRRQCGPHVSAAAKDSVEGICSKIYHISLEYVKRIREKHLAILKENNISEEV
EAPEVEPRLVYCYPVRLAVSAPPMPSVEMHMENNVVCIRYKGEMVKVSRNYFSKLWLL
YRYSCIDDSAFERFLPRVWCLLRRYQMMFGVGLYEGTGLQGSLPVHVFEALHRLFGVS
FECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFAPLSGSFEANPPFCEELMDAMVS
HFERLLESSPEPLSFIVFIPEWREPPTPALTRMEQSRFKRHQLILPAFEHEYRSGSQH
ICKKEEMHYKAVHNTAVLFLQNDPGFAKWAPTPERLQELSAAYRQSGRSHSSGSSSSS
SSEAKDRDSGREQGPSREPHPT"
BASE COUNT 576 a 846 c 750 g 519 t
ORIGIN
1 agatggcggc agcggcgctg gggagggcga ggcggaggcg gcaaaacggg cggtcgagca
61 gaacgtgtag ccgcgtcccc tccagtccgc tccgggcagc tgctgatgca aggaatcccc
121 tgggctcccg tccactccac tgctgaccag cccattcgcc tgtgctgagt cttcctgcag
181 gcctttcctt gcctctgtgg gaccctgtgg gggtccatcc ggctggagaa gaaaagcctc
241 tcatgctaac gttgcagacc ccagagggtc ctgtgtgggt gtggagatgg ccaatgagaa
301 tcacggcagc ccccgggagg aagcgtccct gctgagtcac tccccaggta cctccaatca
361 gagccagccc tgttctccaa agccaatccg cctggttcag gacctcccag aggagctggt
421 gcatgcaggc tgggagaagt gctggagccg gagggagaat cgtccctact acttcaaccg
481 attcaccaac cagtccctgt gggagatgcc cgtgctgggg cagcacgatg tgatttcgga
541 ccctttgggg ctgaatgcga ccccactgcc ccaagactca agcttggtgg aaactccccc
601 ggctgagaac aagcccagaa agcggcagct ctcggaagag cagccaagcg gcaatggtgt
661 gaagaagccc aagattgaaa tcccagtgac acccacaggc cagtcggtgc ccagctcccc
721 cagtatccca ggaaccccaa cgctgaagat gtggggtacg tcccctgaag ataaacagca
781 ggcagctctc ctacgaccca ctgaggtcta ctgggacctg gacatccaga ccaatgctgt
841 catcaagcac cgggggcctt cagaggtgct gcccccgcat cccgaagtgg aactgctccg
901 ctctcagctc atcctgaagc ttcggcagca ctatcgggag ctgtgccagc agcgagaggg
961 cattgagcct ccacgggagt ctttcaaccg ctggatgctg gagcgcaagg tggtagacaa
1021 aggatctgac cccctgttgc ccagcaactg tgaaccagtc gtgtcacctt ccatgtttcg
1081 tgaaatcatg aacgacattc ctatcaggtt atcccgaatc aagttccggg aggaagccaa
1141 gcgcctgctc tttaaatatg cggaggccgc caggcggctc atcgagtcca ggagtgcatc
1201 ccctgacagt aggaaggtgg tcaaatggaa tgtggaagac acctttagct ggcttcggaa
1261 ggaccactca gcctccaagg aggactacat ggatcgcctg gagcatctgc ggaggcagtg
1321 tggcccccac gtctcggccg cagccaagga ctccgtggaa ggcatctgca gtaagatcta
1381 ccacatctcc ctggagtacg tcaaacggat ccgagagaag caccttgcca tcctcaagga
1441 aaacaacatc tcagaggagg tggaggcccc tgaggtggag ccccgcctag tgtactgcta
1501 cccagtccgg ctggctgtgt ctgcaccgcc catgcccagc gtggagatgc acatggagaa
1561 caacgtggtc tgcatccggt ataagggaga gatggtcaag gtcagccgca actacttcag
1621 caagctgtgg ctcctttacc gctacagctg cattgatgac tctgcctttg agaggttcct
1681 gccccgggtc tggtgtcttc tccgacggta ccagatgatg ttcggcgtgg gcctctacga
1741 ggggactggc ctgcagggat cgctgcctgt gcatgtcttt gaggccctcc accgactctt
1801 tggcgtcagc ttcgagtgct tcgcctcacc cctcaactgc tacttccgcc agtactgttc
1861 tgccttcccc gacacagacg gctactttgg ctcccgcggg ccctgcctag actttgctcc
1921 actgagtggt tcatttgagg ccaaccctcc cttctgcgag gagctcatgg atgccatggt
1981 ctctcacttt gagagactgc ttgagagctc accggagccc ctgtccttca tcgtgttcat
2041 ccctgagtgg cgggaacccc caacaccagc gctcacccgc atggagcaga gccgcttcaa
2101 acgccaccag ttgatcctgc ctgcctttga gcatgagtac cgcagtggct cccagcacat
2161 ctgcaagaag gaggaaatgc actacaaggc cgtccacaac acggctgtgc tcttcctaca
2221 gaacgaccct ggctttgcca agtgggcgcc gacgcctgaa cggctgcagg agctgagtgc
2281 tgcctaccgg cagtcaggcc gcagccacag ctctggttct tcctcatcgt cctcctcgga
2341 ggccaaggac cgggactcgg gccgtgagca gggtcctagc cgcgagcctc accccactta
2401 acatatcctg cggggaggag gagccccagg ggtgctagtc tggactgctg ggactcgggc
2461 ccctggggcc tcagagggac cccggctgcc actgacatat gaagattatg gttctgccag
2521 ggctcccctc cctgcctgtc cccaagtcct cacctcaaac tccctccaag tcccatgtat
2581 ataggtcctg atgccttccc aaccccgccc ctcaccctgt tgccaccttg tttcatttgt
2641 aaaaggaaat acagaaaccc ccccaaaaaa aaaaaaaaaa aaaaaaaaaa a
//