LOCUS BC009956 1201 bp mRNA linear HUM 11-DEC-2003 DEFINITION Homo sapiens major histocompatibility complex, class II, DP alpha 1, mRNA (cDNA clone MGC:14114 IMAGE:4309471), complete cds. ACCESSION BC009956 VERSION BC009956.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1201) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1201) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (02-JUL-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Dec 9, 2003 this sequence version replaced BC009956.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Louis Staudt cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 20 Row: p Column: 4 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 24797073. FEATURES Location/Qualifiers source 1..1201 /db_xref="H-InvDB:HIT000034691_08" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:14114 IMAGE:4309471" /tissue_type="Primary B-Cells from Tonsils" /clone_lib="NIH_MGC_48" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1201 /gene="HLA-DPA1" /gene_synonym="HLA-DP1A" /gene_synonym="HLADP" /gene_synonym="HLASB" /db_xref="GeneID:3113" /db_xref="MIM:142880" CDS 32..814 /gene="HLA-DPA1" /gene_synonym="HLA-DP1A" /gene_synonym="HLADP" /gene_synonym="HLASB" /codon_start=1 /product="HLA-DPA1 protein" /protein_id="AAH09956.1" /db_xref="GeneID:3113" /db_xref="MIM:142880" /translation="MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFV QTHRPTGEFMFEFDEDEQFYVDLDKKETVWHLEEFGRAFSFEAQGGLANIAILNNNLN TLIQRSNHTQAANDPPEVTVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVT EGVAESLFLPRTDYSFHKFHYLTFVPSAEDVYDCRVEHWGLDQPLLKHWEAQEPIQMP ETTETVLCALGLVLGLVGIIVGTVLIIKSLRSGHDPRAQGPL" misc_feature 134..376 /gene="HLA-DPA1" /gene_synonym="HLA-DP1A" /gene_synonym="HLADP" /gene_synonym="HLASB" /note="MHC_II_alpha; Region: Class II histocompatibility antigen, alpha domain" /db_xref="CDD:pfam00993" misc_feature 374..661 /gene="HLA-DPA1" /gene_synonym="HLA-DP1A" /gene_synonym="HLADP" /gene_synonym="HLASB" /note="IGc; Region: Immunoglobulin domain constant region subfamily" /db_xref="CDD:cd00098" BASE COUNT 319 a 316 c 273 g 293 t ORIGIN 1 gctcacagtc atcaattata gaccccacaa catgcgccct gaagacagaa tgttccatat 61 cagagctgtg atcttgagag ccctctcctt ggctttcctg ctgagtctcc gaggagctgg 121 ggccatcaag gcggaccatg tgtcaactta tgccgcgttt gtacagaccc atagaccaac 181 aggggagttt atgtttgaat ttgatgaaga tgagcagttc tatgtggatc tggataaaaa 241 ggagaccgtc tggcatctgg aggagtttgg ccgagccttt tcctttgagg ctcagggcgg 301 gctggctaac attgctatat tgaacaacaa cttgaatacc ttgatccagc gttccaacca 361 cactcaggcc gccaatgatc cccctgaggt gaccgtgttt cccaaggagc ctgtggagct 421 gggccagccc aacaccctca tctgccacat tgacaggttc ttcccaccag tgctcaacgt 481 cacatggctg tgcaatgggg agccagtcac tgagggtgtc gctgagagcc tcttcctgcc 541 cagaacagat tacagcttcc acaagttcca ttacctgacc tttgtgccct cagcagagga 601 cgtctatgac tgcagggtgg agcactgggg cttggaccag ccgctcctca agcactggga 661 ggcccaagag ccaatccaga tgcctgagac aacggagact gtgctctgtg ccctgggcct 721 ggtgctgggc ctagtgggca tcatcgtggg caccgtcctc atcataaagt ctctgcgttc 781 tggccatgac ccccgggccc aggggcccct gtgaaatact gtaaaggtga caaaatatct 841 gaacagaaga ggacttagga gagatctgaa ctccagctgc cctacaaact ccgtcacagc 901 ttttcttctc acttcatgtg aaaactaccc cagtggctga ctgaattgct gacccttcaa 961 gctctgtcct tatccgttac cttaaagcag tcattcctta gtaaagtttc caacaaatag 1021 aaattaatga ataaatgttg acactttgat agcactgata tggagattat cctttcattg 1081 agccttttat cctctggtct tctttgaaaa acccctcact gtcaccttcc tgagaatact 1141 ctaagaccaa taaatacttc agtatttcaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 1201 a //