LOCUS BC009944 1561 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens syntaxin 6, mRNA (cDNA clone MGC:12919 IMAGE:4122224),
complete cds.
ACCESSION BC009944
VERSION BC009944.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1561)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1561)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC009944.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: f Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 58294156.
FEATURES Location/Qualifiers
source 1..1561
/db_xref="H-InvDB:HIT000034687"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12919 IMAGE:4122224"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1561
/gene="STX6"
/db_xref="GeneID:10228"
/db_xref="HGNC:HGNC:11441"
/db_xref="MIM:603944"
CDS 172..939
/gene="STX6"
/codon_start=1
/product="syntaxin 6"
/protein_id="AAH09944.1"
/db_xref="GeneID:10228"
/db_xref="HGNC:HGNC:11441"
/db_xref="MIM:603944"
/translation="MSMEDPFFVVKGEVQKAVNTAQGLFQRWTELLQDPSTATREEID
WTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNLDATELSIRKAFITSTRQVVRDM
KDQMSTSSVQALAERKNRQALLGDSGSQNWSTGTTDKYGRLDRELQRANSHFIEEQQA
QQQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNV
MKKLAKVSHMTSDRRQWCAIAILFAVLLVVLILFLVL"
BASE COUNT 401 a 376 c 442 g 342 t
ORIGIN
1 gctggaccag cggccgtcct gtgcacctgg cctgtgcgcg tgcccgctgc tcggcttcac
61 ccagactaag gcgcgggcag ctgcgggaac aggcggggtg ggcggaggga gaccgggagg
121 cacgggcgcc ctgtgcgcgg aggaggtgaa ggcggccggg gccgggacgc catgtccatg
181 gaggacccct tctttgtggt gaaaggagag gtacagaaag cagtcaacac tgcccaggga
241 ttgtttcaga gatggacaga gctcctccag gacccctcca cagcaacaag ggaagaaatc
301 gactggacca ccaacgagct gagaaataac ctccggagca tagagtggga tctagaggac
361 cttgatgaaa ccatcagcat agttgaagca aatcctagaa aatttaacct tgatgcaact
421 gaattgagta taagaaaagc cttcattaca agtactcggc aagttgtcag ggacatgaaa
481 gatcagatgt caacttcatc tgtgcaggca ttagctgaaa gaaaaaatag acaggcactg
541 ctgggagaca gtggcagcca gaactggagc actggaacaa cagataaata tgggcgtctg
601 gaccgagagc tccagagagc caattctcat ttcattgagg agcagcaggc acagcagcag
661 ttgatcgtgg aacagcagga tgagcagttg gagctggtct ctggcagcat cggggtgctg
721 aagaacatgt cccagcgcat cggaggggag ctggaggaac aggcagttat gttggaagat
781 ttctctcacg aattggagag cactcagtcc cggctggaca atgtgatgaa gaaacttgca
841 aaagtatctc atatgaccag tgatcggcgc caatggtgtg ccatagccat cctctttgca
901 gtcctgttgg ttgtgctcat cctcttctta gtgctgtgac ggcggggcct ctgggtgcga
961 gttcctcctg catatgaacc gaggggagga ggagaagctg agcacgtgtg acattgccgt
1021 ctactcacat tcctatcctg gaaacatact gctgcactga cttttctccg tgtgacccca
1081 caattgacat ggctcctcca tcccagcgct ggaagggcca gtgggaagag gaaatagatg
1141 tctgcactcc tggctgcagc tggacaacag aagccccatg ccgcctgtcc agttcggagg
1201 agaactagct gctgccttgc cttccgggac ctcgtttgct gaggagggac ttacagactc
1261 cactggtgtt ttgctgttgc tcattccatg catctttggc agctcttttc ttctgctcag
1321 acccttcccc gtgctcagac agtgcaccgc tgtcccatct aaagaaacct gtcaggaata
1381 cgagcttctg ggtatgtttc gtttcccatt gctgtagcat ttcttatccc ctgagagctg
1441 atgattattg aggacagaag gctcagaaac agtttgtgac agaaaatgca gtgtttcatt
1501 tttcagggat aaatgctaag ataaaattgc ttttccaggt caaaaaaaaa aaaaaaaaaa
1561 a
//